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Conserved domains on  [gi|1935076403|ref|XP_037741218|]
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nuclear transcription factor Y subunit alpha isoform X4 [Chelonia mydas]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10488957)

CCAAT-binding transcription factor such as the nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology:  GO:0003677|GO:0003700|GO:0006366|GO:0016602|GO:0000981
PubMed:  1549471

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
261-316 3.29e-38

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


:

Pssm-ID: 396572  Cd Length: 56  Bit Score: 130.00  E-value: 3.29e-38
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1935076403 261 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 316
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
 
Name Accession Description Interval E-value
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
261-316 3.29e-38

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 130.00  E-value: 3.29e-38
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1935076403 261 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 316
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
CBF smart00521
CCAAT-Binding transcription Factor;
259-318 2.07e-36

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 125.61  E-value: 2.07e-36
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935076403  259 EEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 318
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLN 61
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
260-335 1.26e-15

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 75.23  E-value: 1.26e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1935076403 260 EEPLYVNAKQYHRILKRRQARAKLEAegKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDMQDPTQANEEAM 335
Cdd:COG5224   158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTGNTQDSM 231
 
Name Accession Description Interval E-value
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
261-316 3.29e-38

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 130.00  E-value: 3.29e-38
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1935076403 261 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 316
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
CBF smart00521
CCAAT-Binding transcription Factor;
259-318 2.07e-36

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 125.61  E-value: 2.07e-36
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935076403  259 EEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFS 318
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLN 61
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
260-335 1.26e-15

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 75.23  E-value: 1.26e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1935076403 260 EEPLYVNAKQYHRILKRRQARAKLEAegKIPKERRKYLHESRHRHAMARKRGEGGRFFSPKEKDMQDPTQANEEAM 335
Cdd:COG5224   158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTGNTQDSM 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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