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    LOC551822 ATP-dependent RNA helicase DDX42 [ Apis mellifera (honey bee) ]

    Gene ID: 551822, updated on 2-Oct-2024

    Summary

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    Gene symbol
    LOC551822
    Gene description
    ATP-dependent RNA helicase DDX42
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    GB54784
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC551822 in Genome Data Viewer
    Location:
    chromosome: LG13
    Exon count:
    10
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG13 NC_037650.1 (2895078..2898934)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG13 NC_007082.3 (1120410..1124255)

    Linkage Group LG13 - NC_037650.1Genomic Context describing neighboring genes Neighboring gene acetyl-coenzyme A transporter 1 Neighboring gene cationic amino acid transporter 4 Neighboring gene uncharacterized LOC726790 Neighboring gene serine/threonine-protein kinase 17A Neighboring gene uncharacterized LOC107965402

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
    2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037650.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      2895078..2898934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006557846.3 → XP_006557909.1  ATP-dependent RNA helicase DDX42

      See identical proteins and their annotated locations for XP_006557909.1

      UniProtKB/TrEMBL
      A0A7M7GJC3, A0A7M7R9S0, A0A8B6YR54, A0A8B9B1Y6
      Conserved Domains (3) summary
      COG0513
      Location:229 → 712
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd00079
      Location:472 → 604
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:257 → 461
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

    2. XM_624207.6 → XP_624210.1  ATP-dependent RNA helicase DDX42

      See identical proteins and their annotated locations for XP_624210.1

      UniProtKB/TrEMBL
      A0A7M7GJC3, A0A7M7R9S0, A0A8B6YR54, A0A8B9B1Y6
      Conserved Domains (3) summary
      COG0513
      Location:229 → 712
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cd00079
      Location:472 → 604
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:257 → 461
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    Nucleotide Protein Strain
    Heading Accession and Version

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