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    LOC101252093 DAR GTPase 3, chloroplastic [ Solanum lycopersicum (tomato) ]

    Gene ID: 101252093, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101252093
    Gene description
    DAR GTPase 3, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101252093 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 6 NC_090805.1 (51861147..51867247)
    103 previous assembly SL3.0 (GCF_000188115.4) 6 NC_015443.3 (49509081..49515175)

    Chromosome 6 - NC_090805.1Genomic Context describing neighboring genes Neighboring gene fatty-acid-binding protein 1 Neighboring gene uncharacterized LOC138349018 Neighboring gene protein FANTASTIC FOUR 3-like Neighboring gene protein trichome birefringence-like 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DAR GTPase 3, chloroplastic
    Names
    mitochondrial ribosome-associated GTPase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090805.1 Reference SLM_r2.1 Primary Assembly

      Range
      51861147..51867247
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004242284.5 → XP_004242332.1  DAR GTPase 3, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A3Q7H5D3
      Conserved Domains (3) summary
      cd00882
      Location:215 → 319
      Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
      cd01856
      Location:96 → 266
      YlqF; Circularly permuted YlqF GTPase
      PRK09563
      Location:95 → 369
      rbgA; GTPase YlqF; Reviewed

    2. XM_010324741.3 → XP_010323043.1  DAR GTPase 3, chloroplastic isoform X2

      Conserved Domains (3) summary
      cd00882
      Location:215 → 319
      Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
      cd01856
      Location:96 → 266
      YlqF; Circularly permuted YlqF GTPase
      PRK09563
      Location:95 → 322
      rbgA; GTPase YlqF; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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