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    LOC11443262 pentatricopeptide repeat-containing protein At3g54980, mitochondrial [ Medicago truncatula (barrel medic) ]

    Gene ID: 11443262, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11443262
    Gene description
    pentatricopeptide repeat-containing protein At3g54980, mitochondrial
    Locus tag
    MtrunA17_Chr4g0039041
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11443262 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (37247158..37250612)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (29270976..29274538)

    Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase Neighboring gene isochorismate synthase 2, chloroplastic Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene probable protein phosphatase 2C 23

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At3g54980, mitochondrial
    Names
    PPR containing plant-like protein
    putative tetratricopeptide-like helical domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      37247158..37250612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003607277.4 → XP_003607325.1  pentatricopeptide repeat-containing protein At3g54980, mitochondrial

      See identical proteins and their annotated locations for XP_003607325.1

      UniProtKB/TrEMBL
      G7JQM0
      Conserved Domains (2) summary
      sd00004
      Location:431 → 458
      PPR; PPR repeat [structural motif]
      cl25449
      Location:461 → 821
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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