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Conserved domains on  [gi|357474081|ref|XP_003607325|]
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pentatricopeptide repeat-containing protein At3g54980, mitochondrial [Medicago truncatula]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1006300)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
PubMed:  19004664|23635770|25882680|34065603|18031283|30809817|24471833
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 461-821 2.46e-36

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 148.10  E-value: 2.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  461 TPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTV 540
Cdd:PLN03218  434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  541 INGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREM-CESG-ISPDVITYTSLIDGLCKSN 618
Cdd:PLN03218  514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHpIDPDHITVGALMKACANAG 593

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  619 KIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQ 698
Cdd:PLN03218  594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  699 EMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPS 778
Cdd:PLN03218  674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 357474081  779 VLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILV 821
Cdd:PLN03218  754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
PLN03077 super family cl33629
Protein ECB2; Provisional
 61-688 1.07e-29

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 126.50  E-value: 1.07e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  61 NRFLVTLLSHKSNPKSALKFFHQVERKRGF------VKTVDFISLLIHILSSNSKTCSSLQfLLNNYVFGDATPSAKVFV 134
Cdd:PLN03077  12 KPNLFQLASHKAPNVLPYWNFHGRKRSRGLsvaassSSSTHDSNSQLRALCSHGQLEQALK-LLESMQELRVPVDEDAYV 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 135 ECLLECSGRYGFESDSRVF---------------NYLLKSFVRVNKITDAVECFRTMLEHDLVPWvpimNNLLTAMVRRN 199
Cdd:PLN03077  91 ALFRLCEWKRAVEEGSRVCsralsshpslgvrlgNAMLSMFVRFGELVHAWYVFGKMPERDLFSW----NVLVGGYAKAG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 200 MVCDARQLYDEMVERGIYGDCYTLHVVMRAC-----MKEGK--FEEVEKFfkeakGRGLEVDAAAYSILVQAVC------ 266
Cdd:PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCggipdLARGRevHAHVVRF-----GFELDVDVVNALITMYVKCgdvvsa 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 267 -------RRLDL------------NLAC----ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPM 323
Cdd:PLN03077 242 rlvfdrmPRRDCiswnamisgyfeNGECleglELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 324 NVIVTRSLMKGYCVLGDVNLALQLFDEVVeggvVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLE 403
Cdd:PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 404 GFHEQNLLEHAYGLFDEAVEHG-ITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGItpslVSYNNLILGHC-KKGCMD 481
Cdd:PLN03077 398 ACACLGDLDVGVKLHELAERKGlISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRlNNRCFE 473

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 482 KAYSMLKSILErgLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFI 561
Cdd:PLN03077 474 ALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 562 KQgfvstSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYK-GMKLDVV 640
Cdd:PLN03077 552 KD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLK 626

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*....
gi 357474081 641 AYSALIDGFCKMHDMESASKFFTELldiGLTPNTVVYNSMISGF-IHLN 688
Cdd:PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACrIHRH 672
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 461-821 2.46e-36

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 148.10  E-value: 2.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  461 TPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTV 540
Cdd:PLN03218  434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  541 INGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREM-CESG-ISPDVITYTSLIDGLCKSN 618
Cdd:PLN03218  514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHpIDPDHITVGALMKACANAG 593

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  619 KIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQ 698
Cdd:PLN03218  594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  699 EMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPS 778
Cdd:PLN03218  674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 357474081  779 VLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILV 821
Cdd:PLN03218  754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
PLN03077 PLN03077
Protein ECB2; Provisional
 61-688 1.07e-29

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 126.50  E-value: 1.07e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  61 NRFLVTLLSHKSNPKSALKFFHQVERKRGF------VKTVDFISLLIHILSSNSKTCSSLQfLLNNYVFGDATPSAKVFV 134
Cdd:PLN03077  12 KPNLFQLASHKAPNVLPYWNFHGRKRSRGLsvaassSSSTHDSNSQLRALCSHGQLEQALK-LLESMQELRVPVDEDAYV 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 135 ECLLECSGRYGFESDSRVF---------------NYLLKSFVRVNKITDAVECFRTMLEHDLVPWvpimNNLLTAMVRRN 199
Cdd:PLN03077  91 ALFRLCEWKRAVEEGSRVCsralsshpslgvrlgNAMLSMFVRFGELVHAWYVFGKMPERDLFSW----NVLVGGYAKAG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 200 MVCDARQLYDEMVERGIYGDCYTLHVVMRAC-----MKEGK--FEEVEKFfkeakGRGLEVDAAAYSILVQAVC------ 266
Cdd:PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCggipdLARGRevHAHVVRF-----GFELDVDVVNALITMYVKCgdvvsa 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 267 -------RRLDL------------NLAC----ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPM 323
Cdd:PLN03077 242 rlvfdrmPRRDCiswnamisgyfeNGECleglELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 324 NVIVTRSLMKGYCVLGDVNLALQLFDEVVeggvVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLE 403
Cdd:PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 404 GFHEQNLLEHAYGLFDEAVEHG-ITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGItpslVSYNNLILGHC-KKGCMD 481
Cdd:PLN03077 398 ACACLGDLDVGVKLHELAERKGlISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRlNNRCFE 473

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 482 KAYSMLKSILErgLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFI 561
Cdd:PLN03077 474 ALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 562 KQgfvstSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYK-GMKLDVV 640
Cdd:PLN03077 552 KD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLK 626

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*....
gi 357474081 641 AYSALIDGFCKMHDMESASKFFTELldiGLTPNTVVYNSMISGF-IHLN 688
Cdd:PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACrIHRH 672
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 568-616 5.73e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 69.31  E-value: 5.73e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357474081  568 TSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCK 616
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 428-476 1.18e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.77  E-value: 1.18e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357474081  428 NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCK 476
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 361-395 4.50e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 4.50e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  361 VIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNV 395
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 339-529 6.69e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 6.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 339 GDVNLALQLFDEVVEggVVP-DVVIFSVLINGCSKVGDMEKAYELYTRmkLMGIQP-NVFIVNSLLEGFHEQNLLEHAYG 416
Cdd:COG2956   90 GLLDRAEELLEKLLE--LDPdDAEALRLLAEIYEQEGDWEKAIEVLER--LLKLGPeNAHAYCELAELYLEQGDYDEAIE 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 417 LFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSkgITPSLVS-YNNLILGHCKKGCMDKAYSMLKSILERgl 495
Cdd:COG2956  166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE--QDPDYLPaLPRLAELYEKLGDPEEALELLRKALEL-- 241

                        170       180       190
                 ....*....|....*....|....*....|....
gi 357474081 496 KPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAAN 529
Cdd:COG2956  242 DPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 500-534 2.25e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.06  E-value: 2.25e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  500 VTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTD 534
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 461-821 2.46e-36

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 148.10  E-value: 2.46e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  461 TPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTV 540
Cdd:PLN03218  434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  541 INGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREM-CESG-ISPDVITYTSLIDGLCKSN 618
Cdd:PLN03218  514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkAETHpIDPDHITVGALMKACANAG 593

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  619 KIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQ 698
Cdd:PLN03218  594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  699 EMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPS 778
Cdd:PLN03218  674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 357474081  779 VLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILV 821
Cdd:PLN03218  754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 277-744 4.72e-33

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 137.70  E-value: 4.72e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  277 LLKEMREFGWVPSKGTYTAVIV-ACVKQGNFVEALRLKDEMVSVGLP-MNVivtrsLMKGYCVLGDVNLALQLFDEVVEG 354
Cdd:PLN03218  392 LLEDMEKRGLLDMDKIYHAKFFkACKKQRAVKEAFRFAKLIRNPTLStFNM-----LMSVCASSQDIDGALRVLRLVQEA 466

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  355 GVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFdeavehGI---TNV-- 429
Cdd:PLN03218  467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY------GImrsKNVkp 540

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  430 --VTYNILLKWLGELGKVNEACNLWEKMV--SKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLL 505
Cdd:PLN03218  541 drVVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  506 IDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAV 585
Cdd:PLN03218  621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  586 DSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTEL 665
Cdd:PLN03218  701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  666 LDIGLTPNTVVYNSMISgfihlnnmeaalnLHQEMIKNKVPCDLQVYTSIIGGLLKEGK-LSLALDLYSEMLSKDIVPDI 744
Cdd:PLN03218  781 KEDGIKPNLVMCRCITG-------------LCLRRFEKACALGEPVVSFDSGRPQIENKwTSWALMVYRETISAGTLPTM 847
PLN03077 PLN03077
Protein ECB2; Provisional
 245-788 6.68e-31

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 130.35  E-value: 6.68e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 245 EAKGRGLEVDAAAYSIL------VQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVAC-----VKQGNFVEAlRLK 313
Cdd:PLN03077  35 RKRSRGLSVAASSSSSThdsnsqLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCewkraVEEGSRVCS-RAL 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 314 DEMVSVGLPMNvivtRSLMKGYCVLGDVNLALQLFDEVVEggvvPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQP 393
Cdd:PLN03077 114 SSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 394 NVF-----------------------------------IVNSLLEGFHEQNLLEHAYGLFDEAvehGITNVVTYNILLKW 438
Cdd:PLN03077 186 DVYtfpcvlrtcggipdlargrevhahvvrfgfeldvdVVNALITMYVKCGDVVSARLVFDRM---PRRDCISWNAMISG 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 439 LGELGKVNEACNLWEKMVSKGITPSLVS-----------------------------------YNNLILGHCKKGCMDKA 483
Cdd:PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTitsvisacellgderlgremhgyvvktgfavdvsvCNSLIQMYLSLGSWGEA 342

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 484 ysmlKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVsETQDKLNNF-IK 562
Cdd:PLN03077 343 ----EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL-DVGVKLHELaER 417

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 563 QGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESgispDVITYTSLIDGLC-------------------KSNKIGL- 622
Cdd:PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRlnnrcfealiffrqmlltlKPNSVTLi 493

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 623 ----------AL----EMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESA-SKFFTELLDIgltpntVVYNSMISGFIHL 687
Cdd:PLN03077 494 aalsacarigALmcgkEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAwNQFNSHEKDV------VSWNILLTGYVAH 567

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 688 NNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSK-DIVPDIVMYTVLINGLSNNGQLENASKI 766
Cdd:PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNF 647

                        650       660
                 ....*....|....*....|..
gi 357474081 767 LKEMDgnnITPSVLVYNILIAG 788
Cdd:PLN03077 648 INKMP---ITPDPAVWGALLNA 666
PLN03077 PLN03077
Protein ECB2; Provisional
 61-688 1.07e-29

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 126.50  E-value: 1.07e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  61 NRFLVTLLSHKSNPKSALKFFHQVERKRGF------VKTVDFISLLIHILSSNSKTCSSLQfLLNNYVFGDATPSAKVFV 134
Cdd:PLN03077  12 KPNLFQLASHKAPNVLPYWNFHGRKRSRGLsvaassSSSTHDSNSQLRALCSHGQLEQALK-LLESMQELRVPVDEDAYV 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 135 ECLLECSGRYGFESDSRVF---------------NYLLKSFVRVNKITDAVECFRTMLEHDLVPWvpimNNLLTAMVRRN 199
Cdd:PLN03077  91 ALFRLCEWKRAVEEGSRVCsralsshpslgvrlgNAMLSMFVRFGELVHAWYVFGKMPERDLFSW----NVLVGGYAKAG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 200 MVCDARQLYDEMVERGIYGDCYTLHVVMRAC-----MKEGK--FEEVEKFfkeakGRGLEVDAAAYSILVQAVC------ 266
Cdd:PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCggipdLARGRevHAHVVRF-----GFELDVDVVNALITMYVKCgdvvsa 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 267 -------RRLDL------------NLAC----ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPM 323
Cdd:PLN03077 242 rlvfdrmPRRDCiswnamisgyfeNGECleglELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 324 NVIVTRSLMKGYCVLGDVNLALQLFDEVVeggvVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLE 403
Cdd:PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 404 GFHEQNLLEHAYGLFDEAVEHG-ITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGItpslVSYNNLILGHC-KKGCMD 481
Cdd:PLN03077 398 ACACLGDLDVGVKLHELAERKGlISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRlNNRCFE 473

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 482 KAYSMLKSILErgLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFI 561
Cdd:PLN03077 474 ALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 562 KQgfvstSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYK-GMKLDVV 640
Cdd:PLN03077 552 KD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLK 626

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|....*....
gi 357474081 641 AYSALIDGFCKMHDMESASKFFTELldiGLTPNTVVYNSMISGF-IHLN 688
Cdd:PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACrIHRH 672
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 159-649 4.37e-29

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 124.99  E-value: 4.37e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  159 SFVRVNKITDAV-ECFRtmlehdlvpWVPIMNNllTAMVRRNM---VC-------DARQLYDEMVERGIYGDCYTLHVVM 227
Cdd:PLN03218  411 KFFKACKKQRAVkEAFR---------FAKLIRN--PTLSTFNMlmsVCassqdidGALRVLRLVQEAGLKADCKLYTTLI 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  228 RACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAvCRRldlnlACELLKEMREFGWVPSKGT------YTAVIVACV 301
Cdd:PLN03218  480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG-CAR-----AGQVAKAFGAYGIMRSKNVkpdrvvFNALISACG 553

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  302 KQGNFVEALRLKDEMVSVGLPM--NVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKA 379
Cdd:PLN03218  554 QSGAVDRAFDVLAEMKAETHPIdpDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  380 YELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLWEKMVSK 458
Cdd:PLN03218  634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKlGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  459 GITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTdHTFN 538
Cdd:PLN03218  714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMC 792

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  539 TVINGLGK--------TGRVSETQDKLNNFIKQGFVStsitynsiidgffkegavdSALLAYREMCESGISPDVITYTSL 610
Cdd:PLN03218  793 RCITGLCLrrfekacaLGEPVVSFDSGRPQIENKWTS-------------------WALMVYRETISAGTLPTMEVLSQV 853

                         490       500       510
                  ....*....|....*....|....*....|....*....
gi 357474081  611 IDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGF 649
Cdd:PLN03218  854 LGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 429-801 9.43e-24

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 107.26  E-value: 9.43e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 429 VVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERglkpNAVTYTLLIDG 508
Cdd:PLN03081 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGG 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 509 FFKKGDSERAFVVFEQMMAANIAPTDHTFNTVIN---GLG-------------KTGRVSETQDK---LNNFIKQGFV--- 566
Cdd:PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRasaGLGsaragqqlhccvlKTGVVGDTFVScalIDMYSKCGDIeda 278

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 567 ---------STSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKL 637
Cdd:PLN03081 279 rcvfdgmpeKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 638 DVVAYSALIDGFCKMHDMESASKFFTELldigltP--NTVVYNSMISGFIHlnnmeaalnlhqemiknkvpcdlqvytsi 715
Cdd:PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALIAGYGN----------------------------- 403

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 716 iggllkEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNN-ITPSVLVYNILIAGNFREGN 794
Cdd:PLN03081 404 ------HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHrIKPRAMHYACMIELLGREGL 477


                 ....*..
gi 357474081 795 LQEAFRL 801
Cdd:PLN03081 478 LDEAYAM 484
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 143-561 3.46e-22

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 102.26  E-value: 3.46e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 143 RYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIygdcYT 222
Cdd:PLN03081 116 GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----AS 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 223 LHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCR----RLDLNLACELLKemrefgwvpsKGTYTAVIV 298
Cdd:PLN03081 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGlgsaRAGQQLHCCVLK----------TGVVGDTFV 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 299 ACV------KQGNFVEALRLKDemvsvGLPMNVIVT-RSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCS 371
Cdd:PLN03081 262 SCAlidmysKCGDIEDARCVFD-----GMPEKTTVAwNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 372 KVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAvehGITNVVTYNILLKWLGELGKVNEACNL 451
Cdd:PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM---PRKNLISWNALIAGYGNHGRGTKAVEM 413

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 452 WEKMVSKGITPSLVSYnNLILGHCK-KGCMDKAYSMLKSILE-RGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQmmaAN 529
Cdd:PLN03081 414 FERMIAEGVAPNHVTF-LAVLSACRySGLSEQGWEIFQSMSEnHRIKPRAMHYACMIELLGREGLLDEAYAMIRR---AP 489

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 357474081 530 IAPTDHTFNTVINGLG-----KTGRVSETQ------DKLNNFI 561
Cdd:PLN03081 490 FKPTVNMWAALLTACRihknlELGRLAAEKlygmgpEKLNNYV 532
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 479-822 2.64e-21

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 99.95  E-value: 2.64e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  479 CMDKAYSMLKSILERGLKPNAVTYTLLIDgffKKGDSERAFVVFEQMMAANIAPTDHT-----FNTVINGLGKTGRVSET 553
Cdd:PLN03218  313 GLRKGVSSATNSLSLDKKNNGVKDAELPG---QSSGQAASDVEEENSLAAYNGGVSGKrkspeYIDAYNRLLRDGRIKDC 389

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  554 QDKLNNFIKQGFVSTSITYNSiidGFFK----EGAVDSALLAYREMCESGISpdviTYTSLIDGLCKSNKIGLALEMHSD 629
Cdd:PLN03218  390 IDLLEDMEKRGLLDMDKIYHA---KFFKackkQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCASSQDIDGALRVLRL 462

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  630 MKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDL 709
Cdd:PLN03218  463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  710 QVYTSIIGGLLKEGKLSLALDLYSEML--SKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIA 787
Cdd:PLN03218  543 VVFNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 357474081  788 GNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822
Cdd:PLN03218  623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 521-817 4.14e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 95.71  E-value: 4.14e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 521 VFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVstsiTYNSIIDGFFKEGAVDSALLAYREMCESGI 600
Cdd:PLN03081 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGS 220

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 601 SPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDigltPNTVVYNSM 680
Cdd:PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSM 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 681 ISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQL 760
Cdd:PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 357474081 761 ENASKILKEMDGNNItpsvLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTY 817
Cdd:PLN03081 377 EDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 191-533 4.18e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 96.10  E-value: 4.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  191 LLTAMVRRNMVCDARQLYDEMVERGIYG--DCYTlhVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRR 268
Cdd:PLN03218  585 LMKACANAGQVDRAKEVYQMIHEYNIKGtpEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  269 LDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLF 348
Cdd:PLN03218  663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  349 DEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLegfheqnllehayGL----FDEAVEH 424
Cdd:PLN03218  743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-------------GLclrrFEKACAL 809

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  425 GITnVVTYN-----ILLKWlgelgkVNEACNLWEKMVSKGITPSLVSYNNLIlghckkGCMDK---AYSMLKSILERGL- 495
Cdd:PLN03218  810 GEP-VVSFDsgrpqIENKW------TSWALMVYRETISAGTLPTMEVLSQVL------GCLQLphdATLRNRLIENLGIs 876

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 357474081  496 -----KPNAVTytlLIDGFfkkGDSE-RAFVVFEQMMAANIAPT 533
Cdd:PLN03218  877 adsqkQSNLST---LVDGF---GEYDpRAFSLLEEAASLGVVPS 914
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 203-588 4.63e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 95.32  E-value: 4.63e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 203 DARQLYDEMVERGIYG-DCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSilvqavcRRLDLNLACELLKEM 281
Cdd:PLN03081 105 EALELFEILEAGCPFTlPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN-------RVLLMHVKCGMLIDA 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 282 RE-FGWVPSKG--TYTAVIVACVKQGNFVEALRLKDEMVSVG--LPMNVIVTrsLMKGYCVLGDVNLALQLFDEVVEGGV 356
Cdd:PLN03081 178 RRlFDEMPERNlaSWGTIIGGLVDAGNYREAFALFREMWEDGsdAEPRTFVV--MLRASAGLGSARAGQQLHCCVLKTGV 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 357 VPDVVIFSVLINGCSKVGDMEKAYELYTRMKlmgiQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNIL 435
Cdd:PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSiDQFTFSIM 331

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 436 LKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAysmlKSILERGLKPNAVTYTLLIDGFFKKGDS 515
Cdd:PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA----RNVFDRMPRKNLISWNALIAGYGNHGRG 407

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 357474081 516 ERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIK-QGFVSTSITYNSIIDGFFKEGAVDSA 588
Cdd:PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEnHRIKPRAMHYACMIELLGREGLLDEA 481
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 145-604 1.86e-19

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 94.17  E-value: 1.86e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  145 GFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERG--IYGDCYT 222
Cdd:PLN03218  502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHIT 581

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  223 LHVVMRACMKEGkfeevekffkeakgrglEVDAAAysilvqavcrrldlnlacELLKEMREFGwvpSKGT---YTAVIVA 299
Cdd:PLN03218  582 VGALMKACANAG-----------------QVDRAK------------------EVYQMIHEYN---IKGTpevYTIAVNS 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  300 CVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKA 379
Cdd:PLN03218  624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  380 YELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLWEKMVSK 458
Cdd:PLN03218  704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCpNTITYSILLVASERKDDADVGLDLLSQAKED 783

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  459 GITPSLVSYNNLIlGHCKKGcMDKAYSMLKSILErglkpnavtytllidgfFKKGD-------SERAFVVFEQMMAANIA 531
Cdd:PLN03218  784 GIKPNLVMCRCIT-GLCLRR-FEKACALGEPVVS-----------------FDSGRpqienkwTSWALMVYRETISAGTL 844

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 357474081  532 PTDHTFNTVINGLgktgRVSETQDKLNNFIKQGFVSTSITY----NSIIDGFfkeGAVDSALLAYREMCES-GISPDV 604
Cdd:PLN03218  845 PTMEVLSQVLGCL----QLPHDATLRNRLIENLGISADSQKqsnlSTLVDGF---GEYDPRAFSLLEEAASlGVVPSV 915
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 568-616 5.73e-15

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 69.31  E-value: 5.73e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357474081  568 TSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCK 616
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 602-651 1.24e-14

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 68.54  E-value: 1.24e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 357474081  602 PDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCK 651
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 468-822 1.46e-14

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 77.97  E-value: 1.46e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 468 NNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLidgfFKKGDSERAfvVFEQMMAANIAPTDHTFNTVING---L 544
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVAL----FRLCEWKRA--VEEGSRVCSRALSSHPSLGVRLGnamL 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 545 GKTGRVSETQDKLNNFIKQGfVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLAL 624
Cdd:PLN03077 129 SMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 625 EMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFtellDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNK 704
Cdd:PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF----DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 705 VPCDLQVYTSIIG--GLLKE---------------------------------GKLSLALDLYSEMLSKDIVPdivmYTV 749
Cdd:PLN03077 284 VDPDLMTITSVISacELLGDerlgremhgyvvktgfavdvsvcnsliqmylslGSWGEAEKVFSRMETKDAVS----WTA 359

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 357474081 750 LINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLvpddTTYDILVN 822
Cdd:PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL----ISYVVVAN 428
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 227-433 7.25e-14

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 76.07  E-value: 7.25e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  227 MRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNF 306
Cdd:PLN03218  691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  307 VEALRLKDEMVSVGLPMNVIVTRSL-------MKGYCVLGDVNL----------------ALQLFDEVVEGGVVPDVVIF 363
Cdd:PLN03218  771 DVGLDLLSQAKEDGIKPNLVMCRCItglclrrFEKACALGEPVVsfdsgrpqienkwtswALMVYRETISAGTLPTMEVL 850

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357474081  364 SVLInGC-SKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNllEHAYGLFDEAVEHGITNVVTYN 433
Cdd:PLN03218  851 SQVL-GClQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYD--PRAFSLLEEAASLGVVPSVSFK 918
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 140-421 1.23e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 74.91  E-value: 1.23e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 140 CSGRYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWvpimNNLLTAMVRRNMVCDARQLYDEMVERGIYGD 219
Cdd:PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW----NSMLAGYALHGYSEEALCLYYEMRDSGVSID 324

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 220 CYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCrrldlnlacellkemrefgwvpskgtytaviva 299
Cdd:PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS--------------------------------- 371

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 300 cvKQGNFVEALRLKDEMvsvglPM-NVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEK 378
Cdd:PLN03081 372 --KWGRMEDARNVFDRM-----PRkNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 357474081 379 AYELYTRM-KLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEA 421
Cdd:PLN03081 445 GWEIFQSMsENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 462-511 1.73e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.46  E-value: 1.73e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 357474081  462 PSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFK 511
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 497-546 9.17e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.15  E-value: 9.17e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 357474081  497 PNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGK 546
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 428-476 1.18e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 62.77  E-value: 1.18e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357474081  428 NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCK 476
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 777-823 1.88e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 59.68  E-value: 1.88e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 357474081  777 PSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVNG 823
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 367-534 2.39e-11

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 63.95  E-value: 2.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  367 INGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLegfheqNLLEHAYGLFDEAVEHGITNVvtYNIllkwlgelgkvn 446
Cdd:pfam17177  18 LDKCSKHADATGALALYDAAKAEGVRLAQYHYNVLL------YLCSKAADATDLKPQLAADRG--FEV------------ 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  447 eacnlWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMM 526
Cdd:pfam17177  78 -----FEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHML 152


                  ....*...
gi 357474081  527 AANIAPTD 534
Cdd:pfam17177 153 AHGVELEE 160
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 339-524 4.25e-11

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 63.18  E-value: 4.25e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  339 GDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGD---------MEKAYELYTRMKLMGIQPNVFIVNSLLEgfheqn 409
Cdd:pfam17177  25 ADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADatdlkpqlaADRGFEVFEAMKAQGVSPNEATYTAVAR------ 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  410 lLEHAYGLFDEAVehgitnvvtynILLKwlgelgkvneacnlweKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKS 489
Cdd:pfam17177  99 -LAAAKGDGDLAF-----------DLVK----------------EMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEH 150

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 357474081  490 ILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQ 524
Cdd:pfam17177 151 MLAHGVELEEPELAALLKVSAKAGRADKVYAYLHR 185
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 712-756 9.89e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 57.37  E-value: 9.89e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 357474081  712 YTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSN 756
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 672-721 2.23e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.60  E-value: 2.23e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 357474081  672 PNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLK 721
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 358-405 3.39e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.39e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 357474081  358 PDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGF 405
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03077 PLN03077
Protein ECB2; Provisional
 143-506 9.76e-10

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 62.17  E-value: 9.76e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 143 RYGFESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDLVPWvpimnnllTAMV---RRNMVCD-ARQLYDEMVERGIYG 218
Cdd:PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW--------TAMIsgyEKNGLPDkALETYALMEQDNVSP 387

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 219 DCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGL--EVDAAAYSILVQAVCRRLDLnlACELLKEMRE---FGWV------ 287
Cdd:PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLisYVVVANALIEMYSKCKCIDK--ALEVFHNIPEkdvISWTsiiagl 465

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 288 ---------------------PSKGTYTAVIVACVKQGNF-------VEALR------------LKDEMVSVGlPMN--- 324
Cdd:PLN03077 466 rlnnrcfealiffrqmlltlkPNSVTLIAALSACARIGALmcgkeihAHVLRtgigfdgflpnaLLDLYVRCG-RMNyaw 544

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 325 ---------VIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKL-MGIQPN 394
Cdd:PLN03077 545 nqfnshekdVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEkYSITPN 624

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 395 vfivnsllegfheqnlLEHayglfdeavehgitnvvtYNILLKWLGELGKVNEACNLWEKMvskGITPSLVSYNNLIlgh 474
Cdd:PLN03077 625 ----------------LKH------------------YACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALL--- 664

                        410       420       430
                 ....*....|....*....|....*....|....*..
gi 357474081 475 ckKGCMDKAYSML-----KSILErgLKPNAVTYTLLI 506
Cdd:PLN03077 665 --NACRIHRHVELgelaaQHIFE--LDPNSVGYYILL 697
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 638-684 1.84e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.91  E-value: 1.84e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 357474081  638 DVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGF 684
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-788 1.92e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 53.91  E-value: 1.92e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 357474081  742 PDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIAG 788
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 692-832 7.88e-09

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 56.64  E-value: 7.88e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  692 AALNLHQEMIKNKVPCDLQVYTSII-----GGLLKEGKLSLALD----LYSEMLSKDIVPDIVMYTVLINGLSNNGQLEN 762
Cdd:pfam17177  29 GALALYDAAKAEGVRLAQYHYNVLLylcskAADATDLKPQLAADrgfeVFEAMKAQGVSPNEATYTAVARLAAAKGDGDL 108

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  763 ASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILvngkLKVSHTLG 832
Cdd:pfam17177 109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAAL----LKVSAKAG 174
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 493-525 8.52e-09

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 51.58  E-value: 8.52e-09
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357474081  493 RGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQM 525
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 599-631 3.01e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 50.04  E-value: 3.01e-08
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357474081  599 GISPDVITYTSLIDGLCKSNKIGLALEMHSDMK 631
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 324-372 3.95e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 3.95e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357474081  324 NVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSK 372
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 731-786 4.48e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 50.43  E-value: 4.48e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 357474081  731 LYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILI 786
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 197-382 7.11e-08

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 53.94  E-value: 7.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  197 RRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGkfEEVEKFFKEAKGRGLEVdaaaysilvqavcrrldlnlace 276
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAA--DATDLKPQLAADRGFEV----------------------- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  277 lLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGV 356
Cdd:pfam17177  78 -FEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV 156

                         170       180
                  ....*....|....*....|....*.
gi 357474081  357 VPDVVIFSVLINGCSKVGDMEKAYEL 382
Cdd:pfam17177 157 ELEEPELAALLKVSAKAGRADKVYAY 182
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 393-439 4.27e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 4.27e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 357474081  393 PNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWL 439
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKpNVYTYTILINGL 48
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 485-546 1.44e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 46.20  E-value: 1.44e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 357474081  485 SMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGK 546
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 448-557 2.95e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 48.93  E-value: 2.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  448 ACNLWEKMVSKGITPSLVSYNnLILGHCKKG----------CMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSER 517
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYN-VLLYLCSKAadatdlkpqlAADRGFEVFEAMKAQGVSPNEATYTAVARLAAAKGDGDL 108

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 357474081  518 AFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVS---ETQDKL 557
Cdd:pfam17177 109 AFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADkayEVEEHM 151
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 511-646 3.15e-06

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 48.93  E-value: 3.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  511 KKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKL---NNF------IKQGFVSTSITYNSIIDGFFK 581
Cdd:pfam17177  23 KHADATGALALYDAAKAEGVRLAQYHYNVLLYLCSKAADATDLKPQLaadRGFevfeamKAQGVSPNEATYTAVARLAAA 102

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357474081  582 EGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALI 646
Cdd:pfam17177 103 KGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGVELEEPELAALL 167
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 361-395 4.50e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 43.98  E-value: 4.50e-06
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  361 VIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNV 395
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 225-267 5.12e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 44.28  E-value: 5.12e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 357474081  225 VVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCR 267
Cdd:pfam13041   8 TLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 311-372 5.74e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 44.27  E-value: 5.74e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 357474081  311 RLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSK 372
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 292-336 6.16e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.89  E-value: 6.16e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 357474081  292 TYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYC 336
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 339-529 6.69e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 6.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 339 GDVNLALQLFDEVVEggVVP-DVVIFSVLINGCSKVGDMEKAYELYTRmkLMGIQP-NVFIVNSLLEGFHEQNLLEHAYG 416
Cdd:COG2956   90 GLLDRAEELLEKLLE--LDPdDAEALRLLAEIYEQEGDWEKAIEVLER--LLKLGPeNAHAYCELAELYLEQGDYDEAIE 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 417 LFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSkgITPSLVS-YNNLILGHCKKGCMDKAYSMLKSILERgl 495
Cdd:COG2956  166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALE--QDPDYLPaLPRLAELYEKLGDPEEALELLRKALEL-- 241

                        170       180       190
                 ....*....|....*....|....*....|....
gi 357474081 496 KPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAAN 529
Cdd:COG2956  242 DPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 347-402 9.95e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.89  E-value: 9.95e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 357474081  347 LFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLL 402
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 430-463 1.12e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 1.12e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 357474081  430 VTYNILLKWLGELGKVNEACNLWEKMVSKGITPS 463
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 633-664 1.84e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.95  E-value: 1.84e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 357474081  633 KGMKLDVVAYSALIDGFCKMHDMESASKFFTE 664
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 500-534 2.25e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.06  E-value: 2.25e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  500 VTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTD 534
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 355-387 2.36e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.95  E-value: 2.36e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357474081  355 GVVPDVVIFSVLINGCSKVGDMEKAYELYTRMK 387
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 738-770 2.48e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.95  E-value: 2.48e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357474081  738 KDIVPDIVMYTVLINGLSNNGQLENASKILKEM 770
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 570-604 2.91e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.91e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  570 ITYNSIIDGFFKEGAVDSALLAYREMCESGISPDV 604
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 465-499 2.93e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.93e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  465 VSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNA 499
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 765-822 3.36e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 42.35  E-value: 3.36e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 357474081  765 KILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 711-744 3.61e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.29  E-value: 3.61e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 357474081  711 VYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDI 744
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 185-232 5.51e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 5.51e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 357474081  185 VPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMK 232
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 773-805 5.93e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.79  E-value: 5.93e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 357474081  773 NNITPSVLVYNILIAGNFREGNLQEAFRLHDEM 805
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 361-391 8.96e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.14  E-value: 8.96e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  361 VIFSVLINGCSKVGDMEKAYELYTRMKLMGI 391
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 629-684 9.24e-05

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 41.19  E-value: 9.24e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 357474081  629 DMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGF 684
Cdd:pfam13812   5 EMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 593-652 1.15e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.80  E-value: 1.15e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  593 REMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKM 652
Cdd:pfam13812   4 REMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 300-426 1.17e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 44.31  E-value: 1.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081  300 CVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKgYCVLGDV------NLAL----QLFDEVVEGGVVPDVVIFSVLING 369
Cdd:pfam17177  21 CSKHADATGALALYDAAKAEGVRLAQYHYNVLLY-LCSKAADatdlkpQLAAdrgfEVFEAMKAQGVSPNEATYTAVARL 99

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 357474081  370 CSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGI 426
Cdd:pfam17177 100 AAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV 156
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 254-302 1.71e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.65  E-value: 1.71e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 357474081  254 DAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVK 302
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 465-495 2.56e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.99  E-value: 2.56e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  465 VSYNNLILGHCKKGCMDKAYSMLKSILERGL 495
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 564-595 3.06e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 3.06e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 357474081  564 GFVSTSITYNSIIDGFFKEGAVDSALLAYREM 595
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 675-708 3.29e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.29e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 357474081  675 VVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCD 708
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 781-814 3.42e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 3.42e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 357474081  781 VYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDD 814
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 605-635 3.51e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.60  E-value: 3.51e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  605 ITYTSLIDGLCKSNKIGLALEMHSDMKYKGM 635
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 292-325 4.20e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 4.20e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 357474081  292 TYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNV 325
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 458-488 4.86e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.10  E-value: 4.86e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  458 KGITPSLVSYNNLILGHCKKGCMDKAYSMLK 488
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLD 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 605-639 5.12e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 5.12e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  605 ITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDV 639
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 781-810 5.20e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 5.20e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 357474081  781 VYNILIAGNFREGNLQEAFRLHDEMLDKGL 810
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 675-705 5.62e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 5.62e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  675 VVYNSMISGFIHLNNMEAALNLHQEMIKNKV 705
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 745-775 6.45e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 6.45e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  745 VMYTVLINGLSNNGQLENASKILKEMDGNNI 775
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 430-460 6.51e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 6.51e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  430 VTYNILLKWLGELGKVNEACNLWEKMVSKGI 460
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 500-530 6.98e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 6.98e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  500 VTYTLLIDGFFKKGDSERAFVVFEQMMAANI 530
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 417-471 9.14e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.11  E-value: 9.14e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 357474081  417 LFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLI 471
Cdd:pfam13812   2 ILREMVRDGIQlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 154-458 1.00e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 1.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 154 NYLLKsfvrvNKITDAVECFRTMLEHDlvPW-VPIMNNLLTAMVRRNMVCDARQLYDEMVERgiygDCYTLHVVM---RA 229
Cdd:COG2956   17 NYLLN-----GQPDKAIDLLEEALELD--PEtVEAHLALGNLYRRRGEYDRAIRIHQKLLER----DPDRAEALLelaQD 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 230 CMKEGKFEEVEKFFKEAkgrgLEVDAAAYSILVQavcrrldlnlacellkemrefgwvpskgtytaVIVACVKQGNFVEA 309
Cdd:COG2956   86 YLKAGLLDRAEELLEKL----LELDPDDAEALRL--------------------------------LAEIYEQEGDWEKA 129

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 310 LRLKDEMVSVGlPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEggVVPDVVIFSVLINGC-SKVGDMEKAYELYTRmkL 388
Cdd:COG2956  130 IEVLERLLKLG-PENAHAYCELAELYLEQGDYDEAIEALEKALK--LDPDCARALLLLAELyLEQGDYEEAIAALER--A 204

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357474081 389 MGIQPN-VFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGiTNVVTYNILLKWLGELGKVNEACNLWEKMVSK 458
Cdd:COG2956  205 LEQDPDyLPALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADLLERKEGLEAALALLERQLRR 274
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 570-600 1.13e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 1.13e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  570 ITYNSIIDGFFKEGAVDSALLAYREMCESGI 600
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 428-456 1.50e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.55  E-value: 1.50e-03
                          10        20
                  ....*....|....*....|....*....
gi 357474081  428 NVVTYNILLKWLGELGKVNEACNLWEKMV 456
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 745-779 1.62e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.62e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  745 VMYTVLINGLSNNGQLENASKILKEMDGNNITPSV 779
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 241-302 1.68e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 1.68e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 357474081  241 KFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVK 302
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 330-360 1.73e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.66  E-value: 1.73e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 357474081  330 SLMKGYCVLGDVNLALQLFDEVVEGGVVPDV 360
Cdd:TIGR00756   5 TLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
MRP-S27 pfam10037
Mitochondrial 28S ribosomal protein S27; Members of this family of small ribosomal proteins ...
 476-526 3.09e-03

Mitochondrial 28S ribosomal protein S27; Members of this family of small ribosomal proteins possess one of three conserved blocks of sequence found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins, leaving open the possibility that MRP-S27 might be a functional partner of GTP-binding ribosomal proteins.


Pssm-ID: 462947 [Multi-domain]  Cd Length: 395  Bit Score: 40.89  E-value: 3.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 357474081  476 KKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAF-VVFEQMM 526
Cdd:pfam10037 117 KYGAPDKALYTLKNKVQYGIFPDNFTFNLLMDSFLKNGDYKSAAsVVTELML 168
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 451-506 3.13e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 36.57  E-value: 3.13e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 357474081  451 LWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLI 506
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
298-454 4.25e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.60  E-value: 4.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 298 VACVKQGNFVEALRLKDEMVSVGlPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEggVVPDVV-IFSVLINGCSKVGDM 376
Cdd:COG0457   16 LAYRRLGRYEEAIEDYEKALELD-PDDAEALYNLGLAYLRLGRYEEALADYEQALE--LDPDDAeALNNLGLALQALGRY 92

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357474081 377 EKAYELYTrmKLMGIQP-NVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEK 454
Cdd:COG0457   93 EEALEDYD--KALELDPdDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 711-740 4.26e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 4.26e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 357474081  711 VYTSIIGGLLKEGKLSLALDLYSEMLSKDI 740
Cdd:pfam01535   2 TYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 221-255 4.59e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 4.59e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 357474081  221 YTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDA 255
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 386-440 6.11e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 6.11e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 357474081  386 MKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLG 440
Cdd:pfam13812   6 MVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKpTLDTYNAILGVIG 61
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 339-563 6.64e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 6.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 339 GDVNLALQLFDEVVEggVVPDVV-IFSVLINGCSKVGDMEKAYELYTrmKLMGIQPNVFIVNSLL-EGFHEQNLLEHAYG 416
Cdd:COG2956   22 GQPDKAIDLLEEALE--LDPETVeAHLALGNLYRRRGEYDRAIRIHQ--KLLERDPDRAEALLELaQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357474081 417 LFDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVsYNNLILGHCKKGCMDKAYSMLKSILErgLK 496
Cdd:COG2956   98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA-YCELAELYLEQGDYDEAIEALEKALK--LD 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 357474081 497 PNAV-TYTLLIDGFFKKGDSERAFVVFEQMMAAniaptDHTFNTVINGLG----KTGRVSETQDKLNNFIKQ 563
Cdd:COG2956  175 PDCArALLLLAELYLEQGDYEEAIAALERALEQ-----DPDYLPALPRLAelyeKLGDPEEALELLRKALEL 241
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 557-618 8.13e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.41  E-value: 8.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 357474081  557 LNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIdGLCKSN 618
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL-GVIGGR 63
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 669-700 8.76e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.63  E-value: 8.76e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 357474081  669 GLTPNTVVYNSMISGFIHLNNMEAALNLHQEM 700
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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