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    KN1 homeotic protein knotted-1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 544007, updated on 9-Nov-2023

    Summary

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    Gene symbol
    KN1
    Gene description
    homeotic protein knotted-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    TKN1
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    Genomic context

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    See KN1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 4 NC_015441.3 (62221427..62228531)
    102 previous assembly SL2.50 (GCF_000188115.3) 4 NC_015441.2 (62135550..62142653)

    Chromosome 4 - NC_015441.3Genomic Context describing neighboring genes Neighboring gene putative lipase YDL109C Neighboring gene endo-1,4-beta-xylanase A Neighboring gene homeobox-leucine zipper protein HAT22-like Neighboring gene branched-chain-amino-acid aminotransferase 2, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The making of a compound leaf: genetic manipulation of leaf architecture in tomato. Hareven D, et al. Cell, 1996 Mar 8. PMID 8625411
    2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeotic protein knotted-1
    Names
    Knotted 1 (TKn1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001246878.2 → NP_001233807.2  homeotic protein knotted-1

      Status: VALIDATED

      Source sequence(s)
      AK247390, U32247
      UniProtKB/Swiss-Prot
      Q41330
      UniProtKB/TrEMBL
      A0A3Q7G8D0
      Conserved Domains (4) summary
      pfam03789
      Location:236 → 257
      ELK; ELK domain
      pfam03790
      Location:93 → 132
      KNOX1; KNOX1 domain
      pfam03791
      Location:146 → 192
      KNOX2; KNOX2 domain
      pfam05920
      Location:276 → 315
      Homeobox_KN; Homeobox KN domain

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015441.3 Reference SL3.0 Primary Assembly

      Range
      62221427..62228531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q41330.1 GenPept UniProtKB/Swiss-Prot:Q41330

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