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    LOC100258306 patellin-4 [ Vitis vinifera (wine grape) ]

    Gene ID: 100258306, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100258306
    Gene description
    patellin-4
    Locus tag
    VIT_00028342001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100258306 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (6665684..6667967, complement)
    102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (6288362..6290575, complement)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene prunin 1 Pru du 6.0101 Neighboring gene prunin 1 Pru du 6.0101 Neighboring gene structural maintenance of chromosomes protein 1 Neighboring gene TOM1-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    patellin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      6665684..6667967 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002273036.5 → XP_002273072.1  patellin-4

      See identical proteins and their annotated locations for XP_002273072.1

      UniProtKB/TrEMBL
      A0A438KCZ4, D7U305
      Conserved Domains (2) summary
      smart01100
      Location:120 → 145
      CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
      cd00170
      Location:165 → 329
      SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
    Nucleotide Protein
    Heading Accession and Version

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