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    LOC120302567 cartilage acidic protein 1-like [ Crotalus tigris (Tiger rattlesnake) ]

    Gene ID: 120302567, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120302567
    Gene description
    cartilage acidic protein 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Crotalus tigris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
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    Genomic context

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    See LOC120302567 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100602.1 (400761..491318)

    NW_024100602.1Genomic Context describing neighboring genes Neighboring gene multifunctional protein ADE2 Neighboring gene phosphoribosyl pyrophosphate amidotransferase Neighboring gene LON peptidase N-terminal domain and ring finger 1 Neighboring gene golgin A7 family member B Neighboring gene zinc finger FYVE-type containing 27 Neighboring gene uncharacterized LOC120302570

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024100602 Unplaced Scaffold Reference ASM1654583v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Wnt-protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonal fasciculation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in non-canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cartilage acidic protein 1-like; secreted frizzled-related protein 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1654583v1

    Genomic

    1. NW_024100602.1 Reference ASM1654583v1

      Range
      400761..491318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039331153.1 → XP_039187087.1  cartilage acidic protein 1-like isoform X1

      Conserved Domains (5) summary
      cd07444
      Location:669 → 795
      CRD_SFRP5; Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity
      cd03580
      Location:800 → 925
      NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
      pfam07645
      Location:569 → 615
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:469 → 520
      UnbV_ASPIC; ASPIC and UnbV
      pfam13517
      Location:308 → 372
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    2. XM_039331155.1 → XP_039187089.1  cartilage acidic protein 1-like isoform X3

      Conserved Domains (4) summary
      cd07444
      Location:669 → 795
      CRD_SFRP5; Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity
      pfam07645
      Location:569 → 615
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:469 → 520
      UnbV_ASPIC; ASPIC and UnbV
      pfam13517
      Location:308 → 372
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    3. XM_039331156.1 → XP_039187090.1  cartilage acidic protein 1-like isoform X4

      Conserved Domains (3) summary
      pfam07645
      Location:569 → 615
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:469 → 520
      UnbV_ASPIC; ASPIC and UnbV
      pfam13517
      Location:308 → 372
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    4. XM_039331154.1 → XP_039187088.1  cartilage acidic protein 1-like isoform X2

      Conserved Domains (5) summary
      cd07444
      Location:664 → 790
      CRD_SFRP5; Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity
      cd03580
      Location:795 → 920
      NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
      pfam07645
      Location:564 → 610
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:464 → 515
      UnbV_ASPIC; ASPIC and UnbV
      pfam13517
      Location:303 → 367
      VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella

    5. XM_039331157.1 → XP_039187091.1  secreted frizzled-related protein 5-like isoform X5

      Conserved Domains (4) summary
      cd07444
      Location:305 → 431
      CRD_SFRP5; Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity
      cd03580
      Location:436 → 561
      NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
      pfam07645
      Location:205 → 251
      EGF_CA; Calcium-binding EGF domain
      pfam07593
      Location:105 → 156
      UnbV_ASPIC; ASPIC and UnbV

    6. XM_039331159.1 → XP_039187093.1  secreted frizzled-related protein 5-like isoform X6

      Conserved Domains (3) summary
      cd07444
      Location:181 → 307
      CRD_SFRP5; Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity
      cd03580
      Location:312 → 437
      NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
      pfam07645
      Location:81 → 127
      EGF_CA; Calcium-binding EGF domain

    7. XM_039331160.1 → XP_039187094.1  secreted frizzled-related protein 5-like isoform X7

      Conserved Domains (2) summary
      cd07444
      Location:45 → 171
      CRD_SFRP5; Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity
      cd03580
      Location:176 → 301
      NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    Nucleotide Protein
    Heading Accession and Version

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