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    SUPT20H SPT20 homolog, SAGA complex component [ Canis lupus familiaris (dog) ]

    Gene ID: 477299, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SUPT20Hprovided by VGNC
    Official Full Name
    SPT20 homolog, SAGA complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:59097
    See related
    Ensembl:ENSCAFG00845027530
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SUPT20H in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (3756852..3796789)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (3688667..3728598)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (3722917..3762860)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (3659884..3699722)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (3650940..3690848)

    Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092277 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene exosome component 8 Neighboring gene stress-induced-phosphoprotein 1-like Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene uncharacterized LOC106557745

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor SPT20 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051829.1 Reference ROS_Cfam_1.0

      Range
      3756852..3796789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038434757.1 → XP_038290685.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    2. XM_038434758.1 → XP_038290686.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    3. XM_038434765.1 → XP_038290693.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Related
      ENSCAFP00845038796.1, ENSCAFT00845049447.1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    4. XM_038434760.1 → XP_038290688.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    5. XM_038434766.1 → XP_038290694.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8C0NIZ6, A0A8I3PVJ1, A0A8I3Q2F4, A0A8P0P650
      Related
      ENSCAFP00845038717.1, ENSCAFT00845049340.1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    6. XM_038434755.1 → XP_038290683.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    7. XM_038434763.1 → XP_038290691.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    8. XM_038434756.1 → XP_038290684.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_038434754.1 → XP_038290682.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    10. XM_038434759.1 → XP_038290687.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    11. XM_038434762.1 → XP_038290690.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    12. XM_038434764.1 → XP_038290692.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    13. XM_038434770.1 → XP_038290698.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    14. XM_038434768.1 → XP_038290696.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8C0NG89
      Related
      ENSCAFP00845038601.1, ENSCAFT00845049194.1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    15. XM_038434761.1 → XP_038290689.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8C0S2V6
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    16. XM_038434771.1 → XP_038290699.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_038434769.1 → XP_038290697.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8C0NG89
      Related
      ENSCAFP00845038111.1, ENSCAFT00845048585.1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    RNA

    1. XR_005301480.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049285.1 Alternate UMICH_Zoey_3.1

      Range
      3659884..3699722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038509750.1 → XP_038365678.1  transcription factor SPT20 homolog isoform X1

    2. XM_038509751.1 → XP_038365679.1  transcription factor SPT20 homolog isoform X1

    3. XM_038509753.1 → XP_038365681.1  transcription factor SPT20 homolog isoform X3

    4. XM_038509748.1 → XP_038365676.1  transcription factor SPT20 homolog isoform X1

    5. XM_038509756.1 → XP_038365684.1  transcription factor SPT20 homolog isoform X5

    6. XM_038509749.1 → XP_038365677.1  transcription factor SPT20 homolog isoform X1

    7. XM_038509747.1 → XP_038365675.1  transcription factor SPT20 homolog isoform X1

    8. XM_038509758.1 → XP_038365686.1  transcription factor SPT20 homolog isoform X7

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_038509755.1 → XP_038365683.1  transcription factor SPT20 homolog isoform X5

    10. XM_038509757.1 → XP_038365685.1  transcription factor SPT20 homolog isoform X6

    11. XM_038509762.1 → XP_038365690.1  transcription factor SPT20 homolog isoform X11

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    12. XM_038509759.1 → XP_038365687.1  transcription factor SPT20 homolog isoform X8

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    13. XM_038509760.1 → XP_038365688.1  transcription factor SPT20 homolog isoform X9

    14. XM_038509754.1 → XP_038365682.1  transcription factor SPT20 homolog isoform X4

    15. XM_038509752.1 → XP_038365680.1  transcription factor SPT20 homolog isoform X2

    16. XM_038509763.1 → XP_038365691.1  transcription factor SPT20 homolog isoform X12

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_038509761.1 → XP_038365689.1  transcription factor SPT20 homolog isoform X10

    RNA

    1. XR_005344482.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

      Range
      3650940..3690848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038637446.1 → XP_038493374.1  transcription factor SPT20 homolog isoform X1

    2. XM_038637447.1 → XP_038493375.1  transcription factor SPT20 homolog isoform X1

    3. XM_038637449.1 → XP_038493377.1  transcription factor SPT20 homolog isoform X3

    4. XM_038637444.1 → XP_038493372.1  transcription factor SPT20 homolog isoform X1

    5. XM_038637452.1 → XP_038493380.1  transcription factor SPT20 homolog isoform X5

    6. XM_038637445.1 → XP_038493373.1  transcription factor SPT20 homolog isoform X1

    7. XM_038637443.1 → XP_038493371.1  transcription factor SPT20 homolog isoform X1

    8. XM_038637454.1 → XP_038493382.1  transcription factor SPT20 homolog isoform X7

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_038637451.1 → XP_038493379.1  transcription factor SPT20 homolog isoform X5

    10. XM_038637453.1 → XP_038493381.1  transcription factor SPT20 homolog isoform X6

    11. XM_038637458.1 → XP_038493386.1  transcription factor SPT20 homolog isoform X11

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    12. XM_038637455.1 → XP_038493383.1  transcription factor SPT20 homolog isoform X8

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    13. XM_038637456.1 → XP_038493384.1  transcription factor SPT20 homolog isoform X9

    14. XM_038637450.1 → XP_038493378.1  transcription factor SPT20 homolog isoform X4

    15. XM_038637448.1 → XP_038493376.1  transcription factor SPT20 homolog isoform X2

    16. XM_038637459.1 → XP_038493387.1  transcription factor SPT20 homolog isoform X12

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_038637457.1 → XP_038493385.1  transcription factor SPT20 homolog isoform X10

    RNA

    1. XR_005412207.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

      Range
      3722917..3762860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038573181.1 → XP_038429109.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    2. XM_038573182.1 → XP_038429110.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    3. XM_038573184.1 → XP_038429112.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8C0S2F1

    4. XM_038573179.1 → XP_038429107.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    5. XM_038573187.1 → XP_038429115.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1

    6. XM_038573180.1 → XP_038429108.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    7. XM_038573178.1 → XP_038429106.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    8. XM_038573189.1 → XP_038429117.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    9. XM_038573186.1 → XP_038429114.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1

    10. XM_038573188.1 → XP_038429116.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8C0S2F1

    11. XM_038573193.1 → XP_038429121.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    12. XM_038573190.1 → XP_038429118.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    13. XM_038573191.1 → XP_038429119.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8C0NG89

    14. XM_038573185.1 → XP_038429113.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8C0S2V6

    15. XM_038573183.1 → XP_038429111.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8C0S2F1

    16. XM_038573194.1 → XP_038429122.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    17. XM_038573192.1 → XP_038429120.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8C0NG89

    RNA

    1. XR_005378313.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      3688667..3728598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014107353.3 → XP_013962828.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    2. XM_014107355.3 → XP_013962830.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    3. XM_014107359.3 → XP_013962834.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    4. XM_014107357.3 → XP_013962832.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    5. XM_005635442.4 → XP_005635499.1  transcription factor SPT20 homolog isoform X8

      See identical proteins and their annotated locations for XP_005635499.1

      UniProtKB/TrEMBL
      A0A8C0NIZ6, A0A8I3PVJ1, A0A8I3Q2F4, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    6. XM_038458383.1 → XP_038314311.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    7. XM_038458384.1 → XP_038314312.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    8. XM_022409600.2 → XP_022265308.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_014107352.3 → XP_013962827.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    10. XM_014107356.3 → XP_013962831.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    11. XM_022409602.2 → XP_022265310.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    12. XM_038458385.1 → XP_038314313.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    13. XM_005635450.4 → XP_005635507.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    14. XM_005635447.4 → XP_005635504.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8C0NG89
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    15. XM_014107358.3 → XP_013962833.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8C0S2V6
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    16. XM_005635451.4 → XP_005635508.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_843603.6 → XP_848696.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8C0NG89
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    RNA

    1. XR_002618953.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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