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    ATXN2L ataxin 2 like [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100386696, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ATXN2L
    Gene description
    ataxin 2 like
    See related
    Ensembl:ENSCJAG00000006251
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See ATXN2L in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (26910694..26925776, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (26778402..26793497, complement)

    Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene SH2B adaptor protein 1 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene programmed cell death 5 pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071453.1 Reference mCalJa1.2.pat.X

      Range
      26910694..26925776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054242731.1 → XP_054098706.1  ataxin-2-like protein isoform X21

    2. XM_035267309.2 → XP_035123200.1  ataxin-2-like protein isoform X14

      UniProtKB/TrEMBL
      U3BZ04, U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:662 → 942
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    3. XM_035267308.2 → XP_035123199.1  ataxin-2-like protein isoform X13

      UniProtKB/TrEMBL
      U3CAT8, U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:662 → 942
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    4. XM_054242730.1 → XP_054098705.1  ataxin-2-like protein isoform X17

    5. XM_054242729.1 → XP_054098704.1  ataxin-2-like protein isoform X4

    6. XM_035267300.2 → XP_035123191.1  ataxin-2-like protein isoform X9

      UniProtKB/TrEMBL
      U3F3M0, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:669 → 1055
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    7. XM_035267299.2 → XP_035123190.1  ataxin-2-like protein isoform X8

      UniProtKB/TrEMBL
      U3EAI5, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:669 → 1061
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    8. XM_054242728.1 → XP_054098703.1  ataxin-2-like protein isoform X2

      UniProtKB/TrEMBL
      F7HD84

    9. XM_035267296.2 → XP_035123187.1  ataxin-2-like protein isoform X5

      UniProtKB/TrEMBL
      U3DCP8, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:669 → 1038
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    10. XM_035267307.1 → XP_035123198.1  ataxin-2-like protein isoform X12

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    11. XM_035267306.2 → XP_035123197.1  ataxin-2-like protein isoform X11

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    12. XM_035267310.1 → XP_035123201.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    13. XM_035267294.1 → XP_035123185.1  ataxin-2-like protein isoform X3

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    14. XM_035267298.1 → XP_035123189.1  ataxin-2-like protein isoform X7

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1061
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    15. XM_035267297.2 → XP_035123188.1  ataxin-2-like protein isoform X6

      UniProtKB/TrEMBL
      F7HIE4, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1067
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    16. XM_035267301.1 → XP_035123192.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    17. XM_035267287.1 → XP_035123178.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    18. XM_035267318.2 → XP_035123209.1  ataxin-2-like protein isoform X20

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:150 → 685
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:602 → 882
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    19. XM_035267317.2 → XP_035123208.1  ataxin-2-like protein isoform X19

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:609 → 1001
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 685
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    20. XM_035267315.1 → XP_035123206.1  ataxin-2-like protein isoform X16

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:615 → 984
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 691
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    21. XM_035267316.2 → XP_035123207.1  ataxin-2-like protein isoform X18

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:609 → 978
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 685
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    22. XM_035267313.2 → XP_035123204.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    23. XM_035267304.2 → XP_035123195.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    24. XM_035267290.2 → XP_035123181.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    25. XM_035267311.2 → XP_035123202.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    26. XM_035267302.2 → XP_035123193.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    27. XM_035267288.2 → XP_035123179.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    28. XM_035267312.2 → XP_035123203.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    29. XM_035267303.2 → XP_035123194.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    30. XM_035267289.2 → XP_035123180.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain
    Nucleotide Protein
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