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Conserved domains on  [gi|1864417126|ref|XP_035123191|]
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ataxin-2-like protein isoform X9 [Callithrix jacchus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 124-197 1.62e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


:

Pssm-ID: 464173  Cd Length: 78  Bit Score: 83.76  E-value: 1.62e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  124 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 197
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 265-327 1.54e-17

LsmAD domain; This domain is found associated with Lsm domain.


:

Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.54e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  265 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 327
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 399-943 3.02e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.41  E-value: 3.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  399 ARGINGGPSRMSPKAQRPLRGAKTLSSPSNR--PSGETSVPPPPAVGRMYPPRSPKSAAPAPisASCPEPPIGSAV-PTS 475
Cdd:PHA03247  2456 ARTILGAPFSLSLLLGELFPGAPVYRRPAEArfPFAAGAAPDPGGGGPPDPDAPPAPSRLAP--AILPDEPVGEPVhPRM 2533

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  476 SASIPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPG-RTLEPQELARiaGKVPGLQNEQKRFQLEELRKFGAQFK 554
Cdd:PHA03247  2534 LTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPApRPSEPAVTSR--ARRPDAPPQSARPRAPVDDRGDPRGP 2611

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  555 LQPSSSPENSLDPFPPRILKEEAKGKEKEVDGLLASEPMGSPVSS------------------KTESLSDKEDKPPLAPA 616
Cdd:PHA03247  2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPapgrvsrprrarrlgraaQASSPPQRPRRRAARPT 2691

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  617 GGTEGPEQPPPPCPSQTGSPPVGLIKGEDKDEGP-VAEQVKKSTLNPNAKEFNPTKPLL--SVNKSTSTPTSPGPRTHST 693
Cdd:PHA03247  2692 VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPaAARQASPALPAAPAPPAVPAGPATpgGPARPARPPTTAGPPAPAP 2771

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  694 PSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPmmqaaa 773
Cdd:PHA03247  2772 PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG------ 2844

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  774 aagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyPSQPVFAPMLQSNP--RMLTSGSHPQAIVSSSTPQYPSAEQPTP 851
Cdd:PHA03247  2845 ----------PPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPpvRRLARPAVSRSTESFALPPDQPERPPQP 2911

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  852 QALYATVHQSYPHHATqlhahQPQPATTPtgsQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLP-PG 930
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPP-----QPQPPPPP---PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPqPA 2983

                          570
                   ....*....|...
gi 1864417126  931 PSAQSPQSSFPQP 943
Cdd:PHA03247  2984 PSREAPASSTPPL 2996
PRK07764 super family cl35613
DNA polymerase III subunits gamma and tau; Validated
 871-1055 2.60e-03

DNA polymerase III subunits gamma and tau; Validated


The actual alignment was detected with superfamily member PRK07764:

Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 2.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  871 AHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQN--LYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYA 948
Cdd:PRK07764   594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPaeASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  949 IHHQQlphgfTNMAHVTQAHVQTGITAAPPPHPGAPhppqvmllHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHP 1028
Cdd:PRK07764   674 GGAAP-----AAPPPAPAPAAPAAPAGAAPAQPAPA--------PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

                          170       180
                   ....*....|....*....|....*..
gi 1864417126 1029 QGEQPGQAPGFPGGADDRIPPLPPPGE 1055
Cdd:PRK07764   741 LPPEPDDPPDPAGAPAQPPPPPAPAPA 767
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 124-197 1.62e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 83.76  E-value: 1.62e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  124 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 197
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 265-327 1.54e-17

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.54e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  265 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 327
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PHA03247 PHA03247
large tegument protein UL36; Provisional
 399-943 3.02e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.41  E-value: 3.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  399 ARGINGGPSRMSPKAQRPLRGAKTLSSPSNR--PSGETSVPPPPAVGRMYPPRSPKSAAPAPisASCPEPPIGSAV-PTS 475
Cdd:PHA03247  2456 ARTILGAPFSLSLLLGELFPGAPVYRRPAEArfPFAAGAAPDPGGGGPPDPDAPPAPSRLAP--AILPDEPVGEPVhPRM 2533

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  476 SASIPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPG-RTLEPQELARiaGKVPGLQNEQKRFQLEELRKFGAQFK 554
Cdd:PHA03247  2534 LTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPApRPSEPAVTSR--ARRPDAPPQSARPRAPVDDRGDPRGP 2611

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  555 LQPSSSPENSLDPFPPRILKEEAKGKEKEVDGLLASEPMGSPVSS------------------KTESLSDKEDKPPLAPA 616
Cdd:PHA03247  2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPapgrvsrprrarrlgraaQASSPPQRPRRRAARPT 2691

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  617 GGTEGPEQPPPPCPSQTGSPPVGLIKGEDKDEGP-VAEQVKKSTLNPNAKEFNPTKPLL--SVNKSTSTPTSPGPRTHST 693
Cdd:PHA03247  2692 VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPaAARQASPALPAAPAPPAVPAGPATpgGPARPARPPTTAGPPAPAP 2771

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  694 PSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPmmqaaa 773
Cdd:PHA03247  2772 PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG------ 2844

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  774 aagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyPSQPVFAPMLQSNP--RMLTSGSHPQAIVSSSTPQYPSAEQPTP 851
Cdd:PHA03247  2845 ----------PPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPpvRRLARPAVSRSTESFALPPDQPERPPQP 2911

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  852 QALYATVHQSYPHHATqlhahQPQPATTPtgsQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLP-PG 930
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPP-----QPQPPPPP---PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPqPA 2983

                          570
                   ....*....|...
gi 1864417126  931 PSAQSPQSSFPQP 943
Cdd:PHA03247  2984 PSREAPASSTPPL 2996
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 830-992 5.60e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 53.89  E-value: 5.60e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  830 SHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQL--HAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGS 907
Cdd:pfam09770  217 APAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHpgQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVP 296

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  908 GQPQQNLYHPgaltgtppSLPPGPSAQSPQSSFPQPAAVYAIHHQQLPHGFTNMAHVtQAHvqtgitaappphpgaphPP 987
Cdd:pfam09770  297 VQPTQILQNP--------NRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPI-ITH-----------------PQ 350


                   ....*
gi 1864417126  988 QVMLL 992
Cdd:pfam09770  351 QLAQL 355
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 871-1055 2.60e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 2.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  871 AHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQN--LYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYA 948
Cdd:PRK07764   594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPaeASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  949 IHHQQlphgfTNMAHVTQAHVQTGITAAPPPHPGAPhppqvmllHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHP 1028
Cdd:PRK07764   674 GGAAP-----AAPPPAPAPAAPAAPAGAAPAQPAPA--------PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

                          170       180
                   ....*....|....*....|....*..
gi 1864417126 1029 QGEQPGQAPGFPGGADDRIPPLPPPGE 1055
Cdd:PRK07764   741 LPPEPDDPPDPAGAPAQPPPPPAPAPA 767
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 868-1054 5.03e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.79  E-value: 5.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  868 QLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHlgSGQP--------QQNLYHP-----GALTGTPPSLPPGPSAQ 934
Cdd:pfam09770   99 QVRFNRQQPAARAAQSSAQPPASSLPQYQYASQQSQQ--PSKPvrtgyekyKEPEPIPdlqvdASLWGVAPKKAAAPAPA 176

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  935 SPQSSFP-------------------------QPAAVYAIHHQQLPHGftnmahvtQAHVQTGITAAPPPHPGAPHPPQV 989
Cdd:pfam09770  177 PQPAAQPaslpapsrkmmsleeveaamraqakKPAQQPAPAPAQPPAA--------PPAQQAQQQQQFPPQIQQQQQPQQ 248

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1864417126  990 MLLHPPQSHGGPPQGAV---PQSGVPALSASTPSPYPYIGH----PQGEQPGQA---PGFPGGADDRIPPLPPPG 1054
Cdd:pfam09770  249 QPQQPQQHPGQGHPVTIlqrPQSPQPDPAQPSIQPQAQQFHqqppPVPVQPTQIlqnPNRLSAARVGYPQNPQPG 323
 
Name Accession Description Interval E-value
SM-ATX pfam14438
Ataxin 2 SM domain; This SM domain is found in Ataxin-2.
 124-197 1.62e-19

Ataxin 2 SM domain; This SM domain is found in Ataxin-2.


Pssm-ID: 464173  Cd Length: 78  Bit Score: 83.76  E-value: 1.62e-19
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  124 MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLS--SKFELAVDAVHRKASE--PAGGPRREDIVDTMVFKPSDVMLVHFR 197
Cdd:pfam14438    1 LLFLLTSLVGLVVEVTTKNGEVYEGIFSTASleKDFGVVLKMARRIKKSngSGLNPVRGEIVDTMIFPAKDIVDIEAK 78
LsmAD pfam06741
LsmAD domain; This domain is found associated with Lsm domain.
 265-327 1.54e-17

LsmAD domain; This domain is found associated with Lsm domain.


Pssm-ID: 461998 [Multi-domain]  Cd Length: 65  Bit Score: 77.61  E-value: 1.54e-17
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  265 YGVKTTYDSSLssYTVPLEKdNSEEFRQRELRAAQLAREIESSPQYRLRIAMEN-----DDGRTEEEK 327
Cdd:pfam06741    1 FGVKSTYDENL--YTTKLDR-SSPDYKEREAEAERIAREIEGSASTNAHVAEERgldvdDSGLDEEDK 65
PHA03247 PHA03247
large tegument protein UL36; Provisional
 399-943 3.02e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 58.41  E-value: 3.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  399 ARGINGGPSRMSPKAQRPLRGAKTLSSPSNR--PSGETSVPPPPAVGRMYPPRSPKSAAPAPisASCPEPPIGSAV-PTS 475
Cdd:PHA03247  2456 ARTILGAPFSLSLLLGELFPGAPVYRRPAEArfPFAAGAAPDPGGGGPPDPDAPPAPSRLAP--AILPDEPVGEPVhPRM 2533

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  476 SASIPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPG-RTLEPQELARiaGKVPGLQNEQKRFQLEELRKFGAQFK 554
Cdd:PHA03247  2534 LTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPApRPSEPAVTSR--ARRPDAPPQSARPRAPVDDRGDPRGP 2611

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  555 LQPSSSPENSLDPFPPRILKEEAKGKEKEVDGLLASEPMGSPVSS------------------KTESLSDKEDKPPLAPA 616
Cdd:PHA03247  2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPapgrvsrprrarrlgraaQASSPPQRPRRRAARPT 2691

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  617 GGTEGPEQPPPPCPSQTGSPPVGLIKGEDKDEGP-VAEQVKKSTLNPNAKEFNPTKPLL--SVNKSTSTPTSPGPRTHST 693
Cdd:PHA03247  2692 VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPaAARQASPALPAAPAPPAVPAGPATpgGPARPARPPTTAGPPAPAP 2771

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  694 PSIPVlTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPmmqaaa 773
Cdd:PHA03247  2772 PAAPA-AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG------ 2844

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  774 aagpplvaatPYSSYIPYNPQQFPGQPAMMQPMahyPSQPVFAPMLQSNP--RMLTSGSHPQAIVSSSTPQYPSAEQPTP 851
Cdd:PHA03247  2845 ----------PPPPSLPLGGSVAPGGDVRRRPP---SRSPAAKPAAPARPpvRRLARPAVSRSTESFALPPDQPERPPQP 2911

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  852 QALYATVHQSYPHHATqlhahQPQPATTPtgsQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLP-PG 930
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPP-----QPQPPPPP---PPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPqPA 2983

                          570
                   ....*....|...
gi 1864417126  931 PSAQSPQSSFPQP 943
Cdd:PHA03247  2984 PSREAPASSTPPL 2996
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 830-992 5.60e-07

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 53.89  E-value: 5.60e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  830 SHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQL--HAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGS 907
Cdd:pfam09770  217 APAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHpgQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVP 296

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  908 GQPQQNLYHPgaltgtppSLPPGPSAQSPQSSFPQPAAVYAIHHQQLPHGFTNMAHVtQAHvqtgitaappphpgaphPP 987
Cdd:pfam09770  297 VQPTQILQNP--------NRLSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPI-ITH-----------------PQ 350


                   ....*
gi 1864417126  988 QVMLL 992
Cdd:pfam09770  351 QLAQL 355
PHA03247 PHA03247
large tegument protein UL36; Provisional
 337-851 9.59e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 9.59e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  337 GRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGP-----------GSEARGINGG 405
Cdd:PHA03247  2513 SRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPrpaprpsepavTSRARRPDAP 2592

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  406 PSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRmyPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSV 485
Cdd:PHA03247  2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP--SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  486 SDPGVGSISPASPKISLAPTDVKELST----KEPGRTLEPQELARIAGKVPGLQNEQKRfqleelrkfgaqfklqpSSSP 561
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTVGSLTSladpPPPPPTPEPAPHALVSATPLPPGPAAAR-----------------QASP 2733

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  562 ENSLDPFPPrilkeeAKGKEKEVDGllASEPMGSPVSSKTESLSdkedKPPLAPAGGTEGPEQPPPPCPSQTGSPpvGLI 641
Cdd:PHA03247  2734 ALPAAPAPP------AVPAGPATPG--GPARPARPPTTAGPPAP----APPAAPAAGPPRRLTRPAVASLSESRE--SLP 2799

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  642 KGEDKDEGPVAEQVKKSTLNPNAKEFNPTKPllsvnKSTSTPTSPGPRthSTPSIPVLTAGqsGLYSPQyisyipqihmG 721
Cdd:PHA03247  2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPP-----PTSAQPTAPPPP--PGPPPPSLPLG--GSVAPG----------G 2860

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  722 PAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQQFPGQP- 800
Cdd:PHA03247  2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPq 2940

                          490       500       510       520       530
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1864417126  801 AMMQPMAHYPSQPV---FAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTP 851
Cdd:PHA03247  2941 PPLAPTTDPAGAGEpsgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTP 2994
PHA03247 PHA03247
large tegument protein UL36; Provisional
 669-1055 3.66e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.48  E-value: 3.66e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  669 PTKPLLSVNKSTSTPTSPGPrTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQ-QGKYRG 747
Cdd:PHA03247  2595 SARPRAPVDDRGDPRGPAPP-SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRaRRLGRA 2673

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  748 AKGSLPPQRSdqHQPASAPPMMQAAAAAGPPLVAATPYssyiPYNPQQFPGQPAMMQPMAHYPSQPVfAPMLQSNPRMLT 827
Cdd:PHA03247  2674 AQASSPPQRP--RRRAARPTVGSLTSLADPPPPPPTPE----PAPHALVSATPLPPGPAAARQASPA-LPAAPAPPAVPA 2746

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  828 SGSHPQAIVSSSTPQYPSA-EQPTPQALYATVhqsyPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPhlG 906
Cdd:PHA03247  2747 GPATPGGPARPARPPTTAGpPAPAPPAAPAAG----PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALP--P 2820

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  907 SGQPQQNLYHPGALTGTPPSLPPGPSAQS------------------PQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQAH 968
Cdd:PHA03247  2821 AASPAGPLPPPTSAQPTAPPPPPGPPPPSlplggsvapggdvrrrppSRSPAAKPAAPARPPVRRLARPAVSRSTESFAL 2900

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  969 VQTGITAAPPPHPGAPHPPQVMLLHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRIP 1048
Cdd:PHA03247  2901 PPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVP 2980


                   ....*..
gi 1864417126 1049 PLPPPGE 1055
Cdd:PHA03247  2981 QPAPSRE 2987
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 653-917 1.69e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 1.69e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  653 EQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPrthSTPSIPVLTagqsGLYSPQYISYIPQIH-------MGPAVQ 725
Cdd:pfam09770   98 EQVRFNRQQPAARAAQSSAQPPASSLPQYQYASQQS---QQPSKPVRT----GYEKYKEPEPIPDLQvdaslwgVAPKKA 170

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  726 APQMYPYPVSNSVPGQQGKYRG--------AKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQQFP 797
Cdd:pfam09770  171 AAPAPAPQPAAQPASLPAPSRKmmsleeveAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQP 250

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  798 GQPAMMQPMAHYPSQpvfapmLQsnpRMlTSGSHPQAIVSSSTPQYPSAEQPTPQalyatvhqsyPHHATQLHAHQPQPA 877
Cdd:pfam09770  251 QQPQQHPGQGHPVTI------LQ---RP-QSPQPDPAQPSIQPQAQQFHQQPPPV----------PVQPTQILQNPNRLS 310

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|
gi 1864417126  878 TTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQnLYHP 917
Cdd:pfam09770  311 AARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPI-ITHP 349
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 792-1009 5.76e-05

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 47.34  E-value: 5.76e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  792 NPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSG----SHPQAI----VSSS------TPQYPSAEQPTPQALYAT 857
Cdd:pfam09770  106 QPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVRTGyekyKEPEPIpdlqVDASlwgvapKKAAAPAPAPQPAAQPAS 185

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  858 VHQSYPHHAT------QLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPP-- 929
Cdd:pfam09770  186 LPAPSRKMMSleeveaAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVti 265

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  930 --GPSAQSPQSSFPQPAAVYAIHHQQLPhgfTNMAHVTQA-------HVQTGITAAPPPHPGAPHPPQVMLLHPPQSHGG 1000
Cdd:pfam09770  266 lqRPQSPQPDPAQPSIQPQAQQFHQQPP---PVPVQPTQIlqnpnrlSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQ 342


                   ....*....
gi 1864417126 1001 PPQGAVPQS 1009
Cdd:pfam09770  343 APIITHPQQ 351
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 662-942 8.09e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 47.00  E-value: 8.09e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  662 PNAKEFNP-------TKPLLSVNKSTS-TPTSPGPRTHSTPSIPVLTAgQSGLYSPQY-ISYIPQIHMGPAVQAPQMYPY 732
Cdd:PRK10263   302 PEYDEYDPllngapiTEPVAVAAAATTaTQSWAAPVEPVTQTPPVASV-DVPPAQPTVaWQPVPGPQTGEPVIAPAPEGY 380

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  733 PvsnsvPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQqfPGQPAMMQPMAHYPSQ 812
Cdd:PRK10263   381 P-----QQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPA--PEQPVAGNAWQAEEQQ 453

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  813 PVFAPmlqsNPRMLTSGSHPQAIVSSSTPQYPSAEQPT-----------------PQALYATVHQSYPHHATQLHA-HQ- 873
Cdd:PRK10263   454 STFAP----QSTYQTEQTYQQPAAQEPLYQQPQPVEQQpvvepepvveetkparpPLYYFEEVEEKRAREREQLAAwYQp 529

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1864417126  874 -PQPATTP---TGSQPQSQHAAPSPVQHQAGQAPhLGSGQPQQNLYHPGALTGTPPSLPP----GPSAQSPQSSFPQ 942
Cdd:PRK10263   530 iPEPVKEPepiKSSLKAPSVAAVPPVEAAAAVSP-LASGVKKATLATGAAATVAAPVFSLansgGPRPQVKEGIGPQ 605
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
871-946 1.51e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 45.92  E-value: 1.51e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1864417126  871 AHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAphlgSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAV 946
Cdd:PRK14971   389 APQPSAAAAASPSPSQSSAAAQPSAPQSATQP----AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 375-521 3.81e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 44.68  E-value: 3.81e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  375 PGLSSLPPRGPHHLDNSS----PGPGSEARGINGGPSRMSP----KAQRPLRGAKTLSSP--SNRPSGETSVPPPPavgR 444
Cdd:PTZ00449   514 PEASGLPPKAPGDKEGEEgeheDSKESDEPKEGGKPGETKEgevgKKPGPAKEHKPSKIPtlSKKPEFPKDPKHPK---D 590

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1864417126  445 MYPPRSPKS--AAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPgvgsISPASPKISLAPTDVKELSTKEPGRTLEP 521
Cdd:PTZ00449   591 PEEPKKPKRprSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRP----PPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
PRK10927 PRK10927
cell division protein FtsN;
842-945 5.80e-04

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 43.13  E-value: 5.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  842 QYPSAEQpTPQALYATVH-QSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGAL 920
Cdd:PRK10927   138 EVPWNEQ-TPEQRQQTLQrQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAH 216

                           90       100
                   ....*....|....*....|....*.
gi 1864417126  921 TGTPPSLP-PGPSAQSPQSsfPQPAA 945
Cdd:PRK10927   217 TTAQSKPQqAAPVTRAADA--PKPTA 240
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 794-943 8.72e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.54  E-value: 8.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  794 QQFPG-QPAMMQPMAHypSQPVFAPMlqsnPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAH 872
Cdd:PRK10263   709 QRYSGeQPAGANPFSL--DDFEFSPM----KALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQ 782

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1864417126  873 QPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPgaltgTPPSLPPGPSAQSPQSSFPQP 943
Cdd:PRK10263   783 QPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQ-----PQYQQPQQPVAPQPQDTLLHP 848
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 735-1053 1.47e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 42.83  E-value: 1.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  735 SNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPV 814
Cdd:pfam03154  145 SPSIPSPQDNESDSDSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQST 224

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  815 FAPM------LQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQP------ATTPTG 882
Cdd:pfam03154  225 AAPHtliqqtPTLHPQRLPSPHPPLQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPvppqpfPLTPQS 304

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  883 SQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSS----FPQPAAVYAIHHQQLPHGF 958
Cdd:pfam03154  305 SQSQVPPGPSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTpipqLPNPQSHKHPPHLSGPSPF 384

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  959 TNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLhpPQSHGGPPQGAVP-----QSGVPALSASTPSPYPYIGHPQGEQP 1033
Cdd:pfam03154  385 QMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLM--PQSQQLPPPPAQPpvltqSQSLPPPAASHPPTSGLHQVPSQSPF 462

                          330       340
                   ....*....|....*....|
gi 1864417126 1034 GQAPGFPGGADDRIPPLPPP 1053
Cdd:pfam03154  463 PQHPFVPGGPPPITPPSGPP 482
Herpes_TAF50 pfam03326
Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 ...
 659-917 1.76e-03

Herpesvirus transcription activation factor (transactivator); This family includes EBV BRLF1 and similar ORF 50 proteins from other herpesviruses.


Pssm-ID: 308764 [Multi-domain]  Cd Length: 568  Bit Score: 42.38  E-value: 1.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  659 TLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYipQIHMGPAVQAPQMYPYPvsnsv 738
Cdd:pfam03326  310 TLVPIAGSTGVTEVVSYGHNSTSPSSTPCPSTAVTEADHQTEPEVPWIATAHQESD--QRPIGPGPEKPTFLPPV----- 382

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  739 pgqqGKYRGAKGsLPPQRSDQHQPAsappmmQAAAAAGPPLVAATPYSSYIPYNPQQFPGQPammqpmahypsqpvfapm 818
Cdd:pfam03326  383 ----GGKQFFQG-LRDSRSTSFLTA------PEATSAISDVFQGTEVCQPKRIRALHPPGSP------------------ 433

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  819 lqSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYAT--VHQSYPHHATQLHAHQPQPATTPTGSQPQSQHAAPSPVQ 896
Cdd:pfam03326  434 --SANRPLPSSLAPTPTGPVHEPGSSLTPATVPQPLDAApvATPEASHELQPPDEETPQPLDEDQALCGQQDASHPPPRG 511

                          250       260
                   ....*....|....*....|.
gi 1864417126  897 HQAGQAPHLGSGQPQQNLYHP 917
Cdd:pfam03326  512 QLDELTTTLESMTEDLNLDSP 532
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 871-1055 2.60e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 2.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  871 AHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQN--LYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYA 948
Cdd:PRK07764   594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPaeASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  949 IHHQQlphgfTNMAHVTQAHVQTGITAAPPPHPGAPhppqvmllHPPQSHGGPPQGAVPQSGVPALSASTPSPYPYIGHP 1028
Cdd:PRK07764   674 GGAAP-----AAPPPAPAPAAPAAPAGAAPAQPAPA--------PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740

                          170       180
                   ....*....|....*....|....*..
gi 1864417126 1029 QGEQPGQAPGFPGGADDRIPPLPPPGE 1055
Cdd:PRK07764   741 LPPEPDDPPDPAGAPAQPPPPPAPAPA 767
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
410-553 3.14e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.30  E-value: 3.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  410 SPKAQRPLRGAKTLSSPSNRPSGETSVPPPPAVGRMYPPrsPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPG 489
Cdd:PRK14971   370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAA--AQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAV 447

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1864417126  490 VGSISPASPKISLAPTDVKELSTKEPGRtlEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQF 553
Cdd:PRK14971   448 RPAQFKEEKKIPVSKVSSLGPSTLRPIQ--EKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEF 509
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
360-529 4.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 41.37  E-value: 4.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  360 GPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSPS-NRPSGETSVPP 438
Cdd:PRK07003   366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPaTADRGDDAADG 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  439 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPGRT 518
Cdd:PRK07003   446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525

                          170
                   ....*....|.
gi 1864417126  519 LEPQELARIAG 529
Cdd:PRK07003   526 APPAPEARPPT 536
PHA03247 PHA03247
large tegument protein UL36; Provisional
 333-533 4.78e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 4.78e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  333 RQGSGRESPSLASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHH-------------LDNSSPGPGSEA 399
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRraarptvgsltslADPPPPPPTPEP 2710

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  400 RGINGGPSRMSPKAQRPLRGAK--TLSSPSNRPSGETSVPP-----------PPAVGRMYPPRSPKSAAP--APISASCP 464
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASpaLPAAPAPPAVPAGPATPggparparpptTAGPPAPAPPAAPAAGPPrrLTRPAVAS 2790

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1864417126  465 EPPIGSAVPTSSASIPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEPQELARIAGKVPG 533
Cdd:PHA03247  2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 868-1054 5.03e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 40.79  E-value: 5.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  868 QLHAHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHlgSGQP--------QQNLYHP-----GALTGTPPSLPPGPSAQ 934
Cdd:pfam09770   99 QVRFNRQQPAARAAQSSAQPPASSLPQYQYASQQSQQ--PSKPvrtgyekyKEPEPIPdlqvdASLWGVAPKKAAAPAPA 176

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  935 SPQSSFP-------------------------QPAAVYAIHHQQLPHGftnmahvtQAHVQTGITAAPPPHPGAPHPPQV 989
Cdd:pfam09770  177 PQPAAQPaslpapsrkmmsleeveaamraqakKPAQQPAPAPAQPPAA--------PPAQQAQQQQQFPPQIQQQQQPQQ 248

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1864417126  990 MLLHPPQSHGGPPQGAV---PQSGVPALSASTPSPYPYIGH----PQGEQPGQA---PGFPGGADDRIPPLPPPG 1054
Cdd:pfam09770  249 QPQQPQQHPGQGHPVTIlqrPQSPQPDPAQPSIQPQAQQFHqqppPVPVQPTQIlqnPNRLSAARVGYPQNPQPG 323
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 395-556 6.89e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 6.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  395 PGSEARGINGGPSRMSPKAQRPLRGAKTLSSPsnRPSGETSVPPPPAVGRMYPPRSP-----KSAAPAPISASCPEPPIG 469
Cdd:PRK14951   374 APAEKKTPARPEAAAPAAAPVAQAAAAPAPAA--APAAAASAPAAPPAAAPPAPVAApaaaaPAAAPAAAPAAVALAPAP 451

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  470 SAVPTSSASIPVTSSVSDPGVGS----ISPASPKISLAPTD--------VKELSTKEPGRTLePQELAriagkvpgLQNE 537
Cdd:PRK14951   452 PAQAAPETVAIPVRVAPEPAVASaapaPAAAPAAARLTPTEegdvwhatVQQLAAAEAITAL-ARELA--------LQSE 522

                          170       180
                   ....*....|....*....|....*...
gi 1864417126  538 ---------QKRFQLEELRKFGAQFKLQ 556
Cdd:PRK14951   523 lvardgdqwLLRVERESLNQPGARERLR 550
PHA03369 PHA03369
capsid maturational protease; Provisional
 397-710 8.12e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 39.98  E-value: 8.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  397 SEARGINGGPSRMSPKAQRPLRGAKTLSSPSnRPSGETSVPPPPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTss 476
Cdd:PHA03369   355 APSRVLAAAAKVAVIAAPQTHTGPADRQRPQ-RPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPE-- 431

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  477 asiPVTSSVSDPGVGSISPASPKISLAPTDVKELSTKEPGRTLEP--QELARIAGKVPGL--QNEQKRFQLEELRKFGAQ 552
Cdd:PHA03369   432 ---PVGPVPPQPTNPYVMPISMANMVYPGHPQEHGHERKRKRGGElkEELIETLKLVKKLkeEQESLAKELEATAHKSEI 508

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1864417126  553 fklqpSSSPENSLDPFPPRILKEEAKGKEKEVDGLLASEPMGSPVSSKTESLSDKEDKPPLAPAGGTEGPEQPPPPCPSQ 632
Cdd:PHA03369   509 -----KKIAESEFKNAGAKTAAANIEPNCSADAAAPATKRARPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAAAA 583

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1864417126  633 TGSPpvgliKGEDKDEGPVAEQVKKSTLNPnaKEFNPTKPLLSVNKSTSTPTSPgPRTHSTPSIPVLTAGQSGLYSPQ 710
Cdd:PHA03369   584 GQGS-----DTAEALAGAIETLLTQASAQP--AGLSLPAPAVPVNASTPASTPP-PLAPQEPPQPGTSAPSLETSLPQ 653
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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