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    cxxc1a CXXC finger protein 1a [ Gadus morhua (Atlantic cod) ]

    Gene ID: 115542709, updated on 17-Mar-2024

    Summary

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    Gene symbol
    cxxc1a
    Gene description
    CXXC finger protein 1a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gadus morhua
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
    Orthologs
    zebrafish all
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    Genomic context

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    See cxxc1a in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current gadMor3.0 (GCF_902167405.1) 1 NC_044048.1 (22725713..22738585, complement)

    Chromosome 1 - NC_044048.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, L type, alpha 1F subunit Neighboring gene MAGI family member, X-linked a Neighboring gene FYVE, RhoGEF and PH domain containing 1 Neighboring gene uncharacterized LOC115540243 Neighboring gene methyl CpG binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044048.1 Chromosome 1 Reference gadMor3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CXXC-type zinc finger protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference gadMor3.0 Primary Assembly

    Genomic

    1. NC_044048.1 Reference gadMor3.0 Primary Assembly

      Range
      22725713..22738585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030355100.1 → XP_030210960.1  CXXC-type zinc finger protein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A8C4ZTE9
      Conserved Domains (3) summary
      pfam02008
      Location:115 → 162
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:344 → 578
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain
      cl22851
      Location:24 → 69
      PHD_SF; PHD finger superfamily

    2. XM_030355098.1 → XP_030210958.1  CXXC-type zinc finger protein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A8C4ZTE9
      Conserved Domains (3) summary
      pfam02008
      Location:115 → 162
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:345 → 579
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain
      cl22851
      Location:24 → 69
      PHD_SF; PHD finger superfamily

    3. XM_030355109.1 → XP_030210969.1  CXXC-type zinc finger protein 1-like isoform X3

      Conserved Domains (2) summary
      pfam02008
      Location:71 → 118
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:301 → 535
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain

    4. XM_030355119.1 → XP_030210979.1  CXXC-type zinc finger protein 1-like isoform X4

      Conserved Domains (3) summary
      pfam02008
      Location:115 → 162
      zf-CXXC; CXXC zinc finger domain
      pfam12269
      Location:345 → 512
      zf-CpG_bind_C; CpG binding protein zinc finger C terminal domain
      cl22851
      Location:24 → 69
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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