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    LOC100384199 uncharacterized LOC100384199 [ Zea mays ]

    Gene ID: 100384199, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100384199
    Gene description
    uncharacterized LOC100384199
    Locus tag
    ZEAMMB73_Zm00001d025474
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    pco133519; GRMZM2G096365
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    Genomic context

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    See LOC100384199 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (121555116..121568952, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (119967551..119981259, complement)

    Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene RR1-Corn type-A response regulator Neighboring gene wall-associated receptor kinase-like 1 Neighboring gene endoglucanase 11-like Neighboring gene uncharacterized LOC103641676

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    2. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    3. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloride transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plant-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Chloride channel protein CLC-c; uncharacterized protein LOC100384199

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001353414.1 → NP_001340343.1  Chloride channel protein CLC-c

      Status: VALIDATED

      Source sequence(s)
      BT069458, CABHLF010000007, DT653338, DV522333
      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      121555116..121568952 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023301155.2 → XP_023156923.1  uncharacterized protein LOC100384199 isoform X1

      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    2. XM_035963157.1 → XP_035819050.1  uncharacterized protein LOC100384199 isoform X1

      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    3. XM_023301156.2 → XP_023156924.1  uncharacterized protein LOC100384199 isoform X1

      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    4. XM_035963158.1 → XP_035819051.1  uncharacterized protein LOC100384199 isoform X1

      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    5. XM_023301157.2 → XP_023156925.1  uncharacterized protein LOC100384199 isoform X1

      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    6. XM_035963159.1 → XP_035819052.1  uncharacterized protein LOC100384199 isoform X1

      UniProtKB/TrEMBL
      A0A3L6G5I4, A0A3L6G6H6, K7TKL2
      Conserved Domains (2) summary
      cd03685
      Location:80 → 601
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614 → 782
      CBS_pair_voltage-gated_CLC_euk_bac; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the voltage gated CLC (chloride channel) in eukaryotes and bacteria

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001176774.1: Suppressed sequence

      Description
      NM_001176774.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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