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    LOC111452275 DExH-box ATP-dependent RNA helicase DExH11 [ Cucurbita moschata (crookneck pumpkin) ]

    Gene ID: 111452275, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC111452275
    Gene description
    DExH-box ATP-dependent RNA helicase DExH11
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucurbita moschata
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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    Genomic context

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    See LOC111452275 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current Cmos_1.0 (GCF_002738365.1) Unplaced Scaffold NW_019268530.1 (3445249..3459932)

    NW_019268530.1Genomic Context describing neighboring genes Neighboring gene probable anion transporter 4, chloroplastic Neighboring gene serine/arginine-rich splicing factor SR45a-like Neighboring gene zinc finger CCCH domain-containing protein 49 Neighboring gene uncharacterized LOC111452699 Neighboring gene laccase-4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019268530 Unplaced Scaffold Reference Cmos_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ski complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DExH-box ATP-dependent RNA helicase DExH11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucurbita moschata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cmos_1.0

    Genomic

    1. NW_019268530.1 Reference Cmos_1.0

      Range
      3445249..3459932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023092904.1 → XP_022948672.1  DExH-box ATP-dependent RNA helicase DExH11 isoform X1

      UniProtKB/TrEMBL
      A0A6J1G9W4
      Conserved Domains (1) summary
      cl28230
      Location:351 → 1348
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]

    2. XM_023092906.1 → XP_022948674.1  DExH-box ATP-dependent RNA helicase DExH11 isoform X3

      UniProtKB/TrEMBL
      A0A6J1GAL5
      Conserved Domains (1) summary
      cl28230
      Location:347 → 1344
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]

    3. XM_023092905.1 → XP_022948673.1  DExH-box ATP-dependent RNA helicase DExH11 isoform X2

      UniProtKB/TrEMBL
      A0A6J1G9Z1
      Conserved Domains (1) summary
      cl28230
      Location:350 → 1347
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]

    4. XM_023092907.1 → XP_022948675.1  DExH-box ATP-dependent RNA helicase DExH11 isoform X4

      UniProtKB/TrEMBL
      A0A6J1GAJ6
      Conserved Domains (1) summary
      cl28230
      Location:346 → 1343
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]

    5. XM_023092909.1 → XP_022948677.1  DExH-box ATP-dependent RNA helicase DExH11 isoform X5

      UniProtKB/TrEMBL
      A0A6J1G9X2
      Conserved Domains (1) summary
      cl28230
      Location:106 → 1103
      Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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