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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001142735.1 → NP_001136207.1 protocadherin-15 isoform CD1-2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (B) lacks an alternate in-frame exon in the 5' coding region, compared to variant A. The resulting isoform (CD1-2), also known as protocadherin-15-CD1 isoform 2, lacks a 5-aa segment near the N-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354396
- Consensus CDS
-
CCDS56715.1
- Related
- ENSMUSP00000101064.4, ENSMUST00000105424.10
- Conserved Domains (1) summary
-
- cd11304
Location:722 → 815
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142736.1 → NP_001136208.1 protocadherin-15 isoform CD1-4 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (C) lacks two alternate in-frame exons in the 5' and 3' coding region, compared to variant A. The resulting isoform (CD1-4), also known as protocadherin-15-CD1 isoform 4, lacks a 5-aa segment near the N-terminus and a 2-aa segment near the C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354398
- Consensus CDS
-
CCDS56718.1
- Related
- ENSMUSP00000122911.3, ENSMUST00000131321.9
- Conserved Domains (1) summary
-
- cd11304
Location:722 → 815
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142737.1 → NP_001136209.1 protocadherin-15 isoform CD1-6 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (D) lacks an alternate in-frame exon in the 5' coding region and two alternate in-frame exons in the central coding region, compared to variant A. The resulting isoform (CD1-6), also known as protocadherin-15-CD1 isoform 6, lacks a 5-aa segment near the N-terminus and a 71-aa segment in the central protein, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354400
- Consensus CDS
-
CCDS56719.1
- Related
- ENSMUSP00000101069.4, ENSMUST00000105429.10
- Conserved Domains (1) summary
-
- cd11304
Location:651 → 744
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142738.1 → NP_001136210.1 protocadherin-15 isoform CD1-8 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (F) lacks 4 alternate in-frame exons, compared to variant A. The resulting isoform (CD1-8), also known as protocadherin-15-CD1 isoform 8, has the same N- and C-termini but lacks four internal segments, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354401
- Consensus CDS
-
CCDS48595.1
- Related
- ENSMUSP00000122940.3, ENSMUST00000147189.9
- Conserved Domains (1) summary
-
- cd11304
Location:685 → 778
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142739.1 → NP_001136211.1 protocadherin-15 isoform CD1-9 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (G) lacks two alternate in-frame exons in the 5' coding region, compared to variant A. The resulting isoform (CD1-9), also known as protocadherin-15-CD1 isoform 9, lacks a 27-aa segment near the N-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354402
- Consensus CDS
-
CCDS56720.1
- Related
- ENSMUSP00000121939.3, ENSMUST00000126920.9
- Conserved Domains (1) summary
-
- cd11304
Location:700 → 793
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142740.1 → NP_001136212.1 protocadherin-15 isoform CD1-7 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (E) lacks three alternate in-frame exons, compared to variant A. The resulting isoform (CD1-7), also known as protocadherin-15-CD1 isoform 7, has the same N- and C-termini but lacks three internal segments, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354403
- Consensus CDS
-
CCDS48594.1
- Related
- ENSMUSP00000090076.7, ENSMUST00000092420.13
- Conserved Domains (1) summary
-
- cd11304
Location:722 → 815
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142741.1 → NP_001136213.1 protocadherin-15 isoform CD1-10 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (H) lacks three alternate in-frame exons, compared to variant A. The resulting isoform (CD1-10), also known as protocadherin-15-CD1 isoform 10, has the same N- and C-termini but lacks two internal segments, compared to isoform CD1-10.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, DQ354404
- Consensus CDS
-
CCDS56721.1
- Related
- ENSMUSP00000117731.3, ENSMUST00000129404.9
- Conserved Domains (1) summary
-
- cd11304
Location:700 → 793
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142742.1 → NP_001136214.1 protocadherin-15 isoform CD2-1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (I) includes an alternate in-frame exon in the central coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD2-1), also known as protocadherin-15-CD2 isoform 1, includes an alternate 7-aa segment in the central coding region and has a distinct and longer C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AK139154, CJ166718, DQ354405
- Consensus CDS
-
CCDS56711.1
- UniProtKB/TrEMBL
-
A0A0A6YY17
- Related
- ENSMUSP00000119662.3, ENSMUST00000151116.9
- Conserved Domains (1) summary
-
- cd11304
Location:734 → 827
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142743.1 → NP_001136215.1 protocadherin-15 isoform CD2-2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (J) lacks an alternate in-frame exon in the 5' coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD2-2), also known as protocadherin-15-CD2 isoform 2, lacks a 5-aa segment in the 5' coding region and has a distinct and longer C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AK139154, CJ166718, DQ354406
- Consensus CDS
-
CCDS56716.1
- UniProtKB/TrEMBL
-
A0A140T8S2
- Related
- ENSMUSP00000122466.3, ENSMUST00000131724.9
- Conserved Domains (1) summary
-
- cd11304
Location:722 → 815
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142746.1 → NP_001136218.1 protocadherin-15 isoform CD3-1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (K) has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD3-1), also known as protocadherin-15-CD3 isoform 1, has a distinct and longer C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, CO433511, DQ354413
- Consensus CDS
-
CCDS56713.1
- UniProtKB/TrEMBL
-
A0A140T8S2
- Related
- ENSMUSP00000135501.2, ENSMUST00000177107.8
- Conserved Domains (1) summary
-
- cd11304
Location:727 → 820
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142747.1 → NP_001136219.1 protocadherin-15 isoform SI-1 precursor
See identical proteins and their annotated locations for NP_001136219.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (M) has a distinct 3' splice pattern, compared to variant A. The resulting isoform (SI-1), also known as protocadherin-15-secreted isoform 1, has a substantially shorter and distinct C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AK139154, CJ166718
- Consensus CDS
-
CCDS56712.1
- UniProtKB/Swiss-Prot
-
Q99PJ1
- Related
- ENSMUSP00000135849.2, ENSMUST00000177420.7
- Conserved Domains (1) summary
-
- cd11304
Location:727 → 820
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142748.1 → NP_001136220.1 protocadherin-15 isoform SI-2 precursor
See identical proteins and their annotated locations for NP_001136220.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (N) lacks an alternate in-frame exon in the 5' coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (SI-2), also known as protocadherin-15-secreted isoform 2, lacks a 5-aa segment near the N-terminus and has a substantially shorter and distinct C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
CJ166718, DQ354417
- Consensus CDS
-
CCDS56714.1
- UniProtKB/Swiss-Prot
-
Q99PJ1
- Related
- ENSMUSP00000120056.3, ENSMUST00000125006.9
- Conserved Domains (1) summary
-
- cd11304
Location:722 → 815
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_001142760.1 → NP_001136232.1 protocadherin-15 isoform CD3-2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (L) lacks an alternate in-frame exon in the 5' coding region and has a distinct 3' splice pattern, compared to variant A. The resulting isoform (CD3-2), also known as protocadherin-15-CD3 isoform 2, lacks a 5-aa segment near the N-terminus and has a distinct and longer C-terminus, compared to isoform CD1-1.
- Source sequence(s)
-
AC153858, AK139154, CJ166718, CO433511, DQ354414
- Consensus CDS
-
CCDS56717.1
- UniProtKB/TrEMBL
-
A0A140T8S2
- Related
- ENSMUSP00000141973.2, ENSMUST00000191854.6
- Conserved Domains (1) summary
-
- cd11304
Location:722 → 815
- Cadherin_repeat; Cadherin tandem repeat domain
-
NM_023115.3 → NP_075604.2 protocadherin-15 isoform CD1-1 precursor
See identical proteins and their annotated locations for NP_075604.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (A) encodes isoform CD1-1, also known as protocadherin-15-CD1 isoform 1.
- Source sequence(s)
-
AC121142, AC153858, AF281899, CJ166718
- Consensus CDS
-
CCDS35934.1
- UniProtKB/Swiss-Prot
- D6RCH0, E9Q7D7, E9Q7R1, E9Q7R2, F6KJX4, F6KKG6, F6R5Z7, F6RBV2, F6U3Q6, F6UPC9, F6VPR3, F6WUN7, F6X715, F6XPA1, F6Y0A5, F6YP25, F6YZQ9, F7ASH0, F7CIN1, F7D5J8, F7DFU0, F8VQ61, H3BKS0, Q0ZM15, Q0ZM16, Q0ZM18, Q0ZM19, Q0ZM20, Q0ZM21, Q0ZM22, Q0ZM23, Q0ZM24, Q0ZM25, Q0ZM26, Q0ZM27, Q0ZM28, Q0ZM29, Q0ZM30, Q0ZM31, Q0ZM32, Q0ZM33, Q0ZM34, Q0ZM35, Q0ZM37, Q2VQG7, Q3URZ1, Q3UTS7, Q99PJ1
- Related
- ENSMUSP00000141792.2, ENSMUST00000193361.6
- Conserved Domains (1) summary
-
- cd11304
Location:727 → 820
- Cadherin_repeat; Cadherin tandem repeat domain