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    LOC101252967 protein CHROMATIN REMODELING 5 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101252967, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101252967
    Gene description
    protein CHROMATIN REMODELING 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101252967 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (67832611..67854260)
    102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (66851669..66873282)

    Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene protein SDA1 homolog Neighboring gene scarecrow-like protein 3 Neighboring gene uncharacterized LOC101252672 Neighboring gene Hop-interacting protein THI032

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CHROMATIN REMODELING 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015449.3 Reference SL3.0 Primary Assembly

      Range
      67832611..67854260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010316386.3 → XP_010314688.1  protein CHROMATIN REMODELING 5 isoform X1

      See identical proteins and their annotated locations for XP_010314688.1

      UniProtKB/TrEMBL
      A0A3Q7JYW1
      Conserved Domains (5) summary
      cd00046
      Location:614 → 760
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:597 → 883
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:909 → 1024
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:503 → 557
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam13907
      Location:1497 → 1593
      DUF4208; Domain of unknown function (DUF4208)

    2. XM_019211372.2 → XP_019066917.1  protein CHROMATIN REMODELING 5 isoform X2

    3. XM_010316385.3 → XP_010314687.1  protein CHROMATIN REMODELING 5 isoform X1

      See identical proteins and their annotated locations for XP_010314687.1

      UniProtKB/TrEMBL
      A0A3Q7JYW1
      Conserved Domains (5) summary
      cd00046
      Location:614 → 760
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:597 → 883
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:909 → 1024
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:503 → 557
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam13907
      Location:1497 → 1593
      DUF4208; Domain of unknown function (DUF4208)

    4. XM_004252830.4 → XP_004252878.1  protein CHROMATIN REMODELING 5 isoform X1

      See identical proteins and their annotated locations for XP_004252878.1

      UniProtKB/TrEMBL
      A0A3Q7JYW1
      Conserved Domains (5) summary
      cd00046
      Location:614 → 760
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:597 → 883
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:909 → 1024
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:503 → 557
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam13907
      Location:1497 → 1593
      DUF4208; Domain of unknown function (DUF4208)
    Nucleotide Protein
    Heading Accession and Version

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