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    LOC100260828 calmodulin-binding transcription activator 4 [ Vitis vinifera (wine grape) ]

    Gene ID: 100260828, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC100260828
    Gene description
    calmodulin-binding transcription activator 4
    Locus tag
    VIT_00010506001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100260828 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (25930217..25945034, complement)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (21200705..21215517, complement)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene LRR receptor-like serine/threonine-protein kinase GSO1 Neighboring gene uncharacterized LOC100257379 Neighboring gene uncharacterized LOC100243721 Neighboring gene uncharacterized LOC104880621 Neighboring gene flowering locus C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding transcription activator 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      25930217..25945034 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002270829.5 → XP_002270865.2  calmodulin-binding transcription activator 4 isoform X6

      UniProtKB/TrEMBL
      A0A438DX40
      Conserved Domains (7) summary
      smart00015
      Location:849 → 870
      IQ; Calmodulin-binding motif
      cd00204
      Location:629 → 716
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:426 → 509
      TIG; IPT/TIG domain
      pfam03859
      Location:12 → 126
      CG-1; CG-1 domain
      pfam12796
      Location:629 → 682
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:658 → 716
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:657 → 694
      ANK; ANK repeat [structural motif]

    2. XM_010657741.3 → XP_010656043.1  calmodulin-binding transcription activator 4 isoform X5

      UniProtKB/TrEMBL
      A0A438DX40
      Conserved Domains (7) summary
      smart00015
      Location:849 → 870
      IQ; Calmodulin-binding motif
      cd00204
      Location:629 → 716
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:426 → 509
      TIG; IPT/TIG domain
      pfam03859
      Location:12 → 126
      CG-1; CG-1 domain
      pfam12796
      Location:629 → 682
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:658 → 716
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:657 → 694
      ANK; ANK repeat [structural motif]

    3. XM_059735710.1 → XP_059591693.1  calmodulin-binding transcription activator 4 isoform X7

      UniProtKB/TrEMBL
      A0A438DX40, D7TB03

    4. XM_059735694.1 → XP_059591677.1  calmodulin-binding transcription activator 4 isoform X2

      UniProtKB/TrEMBL
      A0A438DX40

    5. XM_059735691.1 → XP_059591674.1  calmodulin-binding transcription activator 4 isoform X1

      UniProtKB/TrEMBL
      A0A438DX40

    6. XM_059735697.1 → XP_059591680.1  calmodulin-binding transcription activator 4 isoform X3

      UniProtKB/TrEMBL
      A0A438DX40

    7. XM_059735701.1 → XP_059591684.1  calmodulin-binding transcription activator 4 isoform X3

      UniProtKB/TrEMBL
      A0A438DX40

    8. XM_059735702.1 → XP_059591685.1  calmodulin-binding transcription activator 4 isoform X3

      UniProtKB/TrEMBL
      A0A438DX40

    9. XM_059735704.1 → XP_059591687.1  calmodulin-binding transcription activator 4 isoform X4

      UniProtKB/TrEMBL
      A0A438DX40
    Nucleotide Protein
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