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    ATXN2L ataxin 2 like [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100386696, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ATXN2L
    Gene description
    ataxin 2 like
    See related
    Ensembl:ENSCJAG00000006251
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See ATXN2L in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 12 NC_071453.1 (26910694..26925776, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 12 NC_048394.1 (26778402..26793497, complement)

    Chromosome 12 - NC_071453.1Genomic Context describing neighboring genes Neighboring gene SH2B adaptor protein 1 Neighboring gene Tu translation elongation factor, mitochondrial Neighboring gene programmed cell death 5 pseudogene Neighboring gene eukaryotic translation initiation factor 3 subunit C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071453.1 Reference mCalJa1.2.pat.X

      Range
      26910694..26925776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054242731.1 → XP_054098706.1  ataxin-2-like protein isoform X21

    2. XM_035267309.2 → XP_035123200.1  ataxin-2-like protein isoform X14

      UniProtKB/TrEMBL
      U3BZ04, U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:662 → 942
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    3. XM_035267308.2 → XP_035123199.1  ataxin-2-like protein isoform X13

      UniProtKB/TrEMBL
      U3CAT8, U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:662 → 942
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    4. XM_054242730.1 → XP_054098705.1  ataxin-2-like protein isoform X17

    5. XM_054242729.1 → XP_054098704.1  ataxin-2-like protein isoform X4

    6. XM_035267300.2 → XP_035123191.1  ataxin-2-like protein isoform X9

      UniProtKB/TrEMBL
      U3F3M0, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:669 → 1055
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    7. XM_035267299.2 → XP_035123190.1  ataxin-2-like protein isoform X8

      UniProtKB/TrEMBL
      U3EAI5, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:669 → 1061
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    8. XM_054242728.1 → XP_054098703.1  ataxin-2-like protein isoform X2

      UniProtKB/TrEMBL
      F7HD84

    9. XM_035267296.2 → XP_035123187.1  ataxin-2-like protein isoform X5

      UniProtKB/TrEMBL
      U3DCP8, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:669 → 1038
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 745
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    10. XM_035267307.1 → XP_035123198.1  ataxin-2-like protein isoform X12

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    11. XM_035267306.2 → XP_035123197.1  ataxin-2-like protein isoform X11

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    12. XM_035267310.1 → XP_035123201.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    13. XM_035267294.1 → XP_035123185.1  ataxin-2-like protein isoform X3

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    14. XM_035267298.1 → XP_035123189.1  ataxin-2-like protein isoform X7

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1061
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    15. XM_035267297.2 → XP_035123188.1  ataxin-2-like protein isoform X6

      UniProtKB/TrEMBL
      F7HIE4, U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1067
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    16. XM_035267301.1 → XP_035123192.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    17. XM_035267287.1 → XP_035123178.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    18. XM_035267318.2 → XP_035123209.1  ataxin-2-like protein isoform X20

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:150 → 685
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:602 → 882
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    19. XM_035267317.2 → XP_035123208.1  ataxin-2-like protein isoform X19

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:609 → 1001
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 685
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    20. XM_035267315.1 → XP_035123206.1  ataxin-2-like protein isoform X16

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:615 → 984
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 691
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    21. XM_035267316.2 → XP_035123207.1  ataxin-2-like protein isoform X18

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:609 → 978
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:150 → 685
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:205 → 267
      LsmAD; LsmAD domain
      pfam14438
      Location:64 → 137
      SM-ATX; Ataxin 2 SM domain

    22. XM_035267313.2 → XP_035123204.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    23. XM_035267304.2 → XP_035123195.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    24. XM_035267290.2 → XP_035123181.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    25. XM_035267311.2 → XP_035123202.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    26. XM_035267302.2 → XP_035123193.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    27. XM_035267288.2 → XP_035123179.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    28. XM_035267312.2 → XP_035123203.1  ataxin-2-like protein isoform X15

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    29. XM_035267303.2 → XP_035123194.1  ataxin-2-like protein isoform X10

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      PHA03247
      Location:675 → 1058
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain

    30. XM_035267289.2 → XP_035123180.1  ataxin-2-like protein isoform X1

      UniProtKB/TrEMBL
      U3FYA2
      Conserved Domains (4) summary
      COG5180
      Location:210 → 751
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      PRK10263
      Location:668 → 948
      PRK10263; DNA translocase FtsK; Provisional
      pfam06741
      Location:265 → 327
      LsmAD; LsmAD domain
      pfam14438
      Location:124 → 197
      SM-ATX; Ataxin 2 SM domain
    Nucleotide Protein
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