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    GLB1 galactosidase beta 1 [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102945910, updated on 10-Mar-2024

    Summary

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    Gene symbol
    GLB1
    Gene description
    galactosidase beta 1
    Locus tag
    UY3_17432
    See related
    EnsemblRapid:ENSCMYG00015023035
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Orthologs
    human mouse all
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    Genomic context

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    See GLB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 2 NC_057850.1 (180180838..180247195)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 2 NC_051242.1 (180180853..180247195)

    Chromosome 2 - NC_057850.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene transmembrane protein with metallophosphoesterase domain Neighboring gene zinc finger and SCAN domain-containing protein 29-like Neighboring gene C-C motif chemokine receptor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-galactosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-galactosidase
    Names
    Beta-galactosidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_057850.1 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      180180838..180247195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037890203.2 → XP_037746131.1  beta-galactosidase isoform X3

      Conserved Domains (2) summary
      pfam01301
      Location:1 → 284
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:469 → 543
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    2. XM_027832838.3 → XP_027688639.2  beta-galactosidase isoform X2

      UniProtKB/TrEMBL
      M7ARL1
      Related
      ENSCMYP00015035208.1, ENSCMYT00015043351.1
      Conserved Domains (2) summary
      pfam01301
      Location:56 → 370
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:555 → 629
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    3. XM_037890205.2 → XP_037746133.1  beta-galactosidase isoform X3

      Conserved Domains (2) summary
      pfam01301
      Location:1 → 284
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:469 → 543
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    4. XM_037890202.2 → XP_037746130.1  beta-galactosidase isoform X3

      Conserved Domains (2) summary
      pfam01301
      Location:1 → 284
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:469 → 543
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    5. XM_037890204.2 → XP_037746132.1  beta-galactosidase isoform X3

      Conserved Domains (2) summary
      pfam01301
      Location:1 → 284
      Glyco_hydro_35; Glycosyl hydrolases family 35
      pfam13364
      Location:469 → 543
      BetaGal_dom4_5; Beta-galactosidase jelly roll domain

    6. XM_043540715.1 → XP_043396650.1  beta-galactosidase isoform X1

      UniProtKB/TrEMBL
      M7ARL1
      Conserved Domains (1) summary
      PLN03059
      Location:72 → 626
      PLN03059; beta-galactosidase; Provisional

    7. XM_043540716.1 → XP_043396651.1  beta-galactosidase isoform X4

      Conserved Domains (1) summary
      PLN03059
      Location:72 → 391
      PLN03059; beta-galactosidase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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