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    LAMA2 laminin subunit alpha 2 [ Corvus kubaryi (Mariana crow) ]

    Gene ID: 121659409, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LAMA2
    Gene description
    laminin subunit alpha 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus kubaryi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See LAMA2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    65
    Annotation release Status Assembly Chr Location
    100 current C.kubaryi_AGA036_p1.0 (GCF_017639235.1) Unplaced Scaffold NW_024582091.1 (34200431..34548811)

    NW_024582091.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene vesicular inhibitory amino acid transporter-like Neighboring gene Rho GTPase activating protein 18 Neighboring gene transmembrane protein 244

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024582091 Unplaced Scaffold Reference C.kubaryi_AGA036_p1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of embryonic development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    laminin subunit alpha-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus kubaryi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference C.kubaryi_AGA036_p1.0

    Genomic

    1. NW_024582091.1 Reference C.kubaryi_AGA036_p1.0

      Range
      34200431..34548811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042017501.1 → XP_041873435.1  laminin subunit alpha-2 isoform X1

      Conserved Domains (10) summary
      smart00136
      Location:32 → 278
      LamNT; Laminin N-terminal domain (domain VI)
      smart00180
      Location:962 → 1006
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00281
      Location:1223 → 1392
      LamB; Laminin B domain
      smart00282
      Location:2198 → 2340
      LamG; Laminin G domain
      COG1196
      Location:1754 → 2105
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00055
      Location:912 → 960
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2824 → 2973
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam06008
      Location:1622 → 1878
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2066 → 2202
      Laminin_II; Laminin Domain II
      cl02548
      Location:575 → 704
      Laminin_B; Laminin B (Domain IV)

    2. XM_042017503.1 → XP_041873437.1  laminin subunit alpha-2 isoform X3

      Conserved Domains (10) summary
      smart00136
      Location:32 → 278
      LamNT; Laminin N-terminal domain (domain VI)
      smart00180
      Location:962 → 1006
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00281
      Location:1223 → 1392
      LamB; Laminin B domain
      smart00282
      Location:2198 → 2340
      LamG; Laminin G domain
      COG1196
      Location:1754 → 2105
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00055
      Location:912 → 960
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2820 → 2969
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam06008
      Location:1622 → 1878
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2066 → 2202
      Laminin_II; Laminin Domain II
      cl02548
      Location:575 → 704
      Laminin_B; Laminin B (Domain IV)

    3. XM_042017502.1 → XP_041873436.1  laminin subunit alpha-2 isoform X2

      Conserved Domains (10) summary
      smart00136
      Location:32 → 278
      LamNT; Laminin N-terminal domain (domain VI)
      smart00180
      Location:962 → 1006
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00281
      Location:1223 → 1392
      LamB; Laminin B domain
      smart00282
      Location:2196 → 2338
      LamG; Laminin G domain
      COG3883
      Location:1828 → 2077
      CwlO1; Uncharacterized N-terminal domain of peptidoglycan hydrolase CwlO [Function unknown]
      cd00055
      Location:912 → 960
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2822 → 2971
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam06008
      Location:1622 → 1878
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2066 → 2200
      Laminin_II; Laminin Domain II
      cl02548
      Location:575 → 704
      Laminin_B; Laminin B (Domain IV)
    Nucleotide Protein
    Heading Accession and Version

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