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    LOC120300177 protocadherin alpha-5-like [ Crotalus tigris (Tiger rattlesnake) ]

    Gene ID: 120300177, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC120300177
    Gene description
    protocadherin alpha-5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Crotalus tigris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Viperidae; Crotalinae; Crotalus
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    Genomic context

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    See LOC120300177 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM1654583v1 (GCF_016545835.1) Unplaced Scaffold NW_024100509.1 (4607262..4614922)

    NW_024100509.1Genomic Context describing neighboring genes Neighboring gene protocadherin-10-like Neighboring gene protocadherin alpha-3-like Neighboring gene protocadherin alpha-5-like Neighboring gene protocadherin alpha-5-like Neighboring gene protocadherin alpha-5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024100509 Unplaced Scaffold Reference ASM1654583v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin alpha-5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Crotalus tigris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1654583v1

    Genomic

    1. NW_024100509.1 Reference ASM1654583v1

      Range
      4607262..4614922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039325829.1 → XP_039181763.1  protocadherin alpha-5-like

      Conserved Domains (4) summary
      cd11304
      Location:246 → 346
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:157 → 240
      CA; Cadherin repeats
      pfam08266
      Location:29 → 111
      Cadherin_2; Cadherin-like
      pfam16492
      Location:686 → 727
      Cadherin_C_2; Cadherin cytoplasmic C-terminal
    Nucleotide Protein
    Heading Accession and Version

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