U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LAMA1 laminin subunit alpha 1 [ Hyaena hyaena (striped hyena) ]

    Gene ID: 120221358, updated on 21-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LAMA1
    Gene description
    laminin subunit alpha 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hyaena hyaena
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LAMA1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    63
    Annotation release Status Assembly Chr Location
    100 current ASM300989v1 (GCF_003009895.1) Unplaced Scaffold NW_024081407.1 (649566..816876, complement)

    NW_024081407.1Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 28 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene uncharacterized LOC120221365 Neighboring gene uncharacterized LOC120221359 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC120221366 Neighboring gene leucine rich repeat containing 30

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_024081407 Unplaced Scaffold Reference ASM300989v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in blood vessel morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in camera-type eye development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of embryonic development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    laminin subunit alpha-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Hyaena hyaena Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM300989v1 Primary Assembly

    Genomic

    1. NW_024081407.1 Reference ASM300989v1 Primary Assembly

      Range
      649566..816876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039218722.1 → XP_039074653.1  laminin subunit alpha-1 isoform X2

      Conserved Domains (9) summary
      smart00136
      Location:20 → 272
      LamNT; Laminin N-terminal domain (domain VI)
      smart00180
      Location:956 → 1000
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00055
      Location:746 → 794
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2312 → 2468
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam06008
      Location:1580 → 1836
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2017 → 2150
      Laminin_II; Laminin Domain II
      pfam00052
      Location:572 → 712
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:907 → 953
      Laminin_EGF; Laminin EGF domain
      pfam00054
      Location:2753 → 2882
      Laminin_G_1; Laminin G domain

    2. XM_039218721.1 → XP_039074652.1  laminin subunit alpha-1 isoform X1

      Conserved Domains (10) summary
      PRK15041
      Location:1814 → 2121
      PRK15041; methyl-accepting chemotaxis protein
      smart00136
      Location:20 → 272
      LamNT; Laminin N-terminal domain (domain VI)
      smart00180
      Location:956 → 1000
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      cd00055
      Location:746 → 794
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2313 → 2469
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam06008
      Location:1580 → 1836
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2018 → 2151
      Laminin_II; Laminin Domain II
      pfam00052
      Location:572 → 712
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:907 → 953
      Laminin_EGF; Laminin EGF domain
      pfam00054
      Location:2754 → 2883
      Laminin_G_1; Laminin G domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.