U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    SUPT20H SPT20 homolog, SAGA complex component [ Canis lupus familiaris (dog) ]

    Gene ID: 477299, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SUPT20Hprovided by VGNC
    Official Full Name
    SPT20 homolog, SAGA complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:59097
    See related
    Ensembl:ENSCAFG00845027530
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SUPT20H in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (3756852..3796789)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (3688667..3728598)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (3722917..3762860)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (3659884..3699722)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (3650940..3690848)

    Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092277 Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene exosome component 8 Neighboring gene stress-induced-phosphoprotein 1-like Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene uncharacterized LOC106557745

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor SPT20 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051829.1 Reference ROS_Cfam_1.0

      Range
      3756852..3796789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038434757.1 → XP_038290685.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    2. XM_038434758.1 → XP_038290686.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    3. XM_038434765.1 → XP_038290693.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Related
      ENSCAFP00845038796.1, ENSCAFT00845049447.1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    4. XM_038434760.1 → XP_038290688.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    5. XM_038434766.1 → XP_038290694.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8C0NIZ6, A0A8I3PVJ1, A0A8I3Q2F4, A0A8P0P650
      Related
      ENSCAFP00845038717.1, ENSCAFT00845049340.1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    6. XM_038434755.1 → XP_038290683.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    7. XM_038434763.1 → XP_038290691.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    8. XM_038434756.1 → XP_038290684.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_038434754.1 → XP_038290682.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    10. XM_038434759.1 → XP_038290687.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    11. XM_038434762.1 → XP_038290690.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    12. XM_038434764.1 → XP_038290692.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    13. XM_038434770.1 → XP_038290698.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    14. XM_038434768.1 → XP_038290696.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8C0NG89
      Related
      ENSCAFP00845038601.1, ENSCAFT00845049194.1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    15. XM_038434761.1 → XP_038290689.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8C0S2V6
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    16. XM_038434771.1 → XP_038290699.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_038434769.1 → XP_038290697.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8C0NG89
      Related
      ENSCAFP00845038111.1, ENSCAFT00845048585.1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    RNA

    1. XR_005301480.1 RNA Sequence

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049285.1 Alternate UMICH_Zoey_3.1

      Range
      3659884..3699722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038509750.1 → XP_038365678.1  transcription factor SPT20 homolog isoform X1

    2. XM_038509751.1 → XP_038365679.1  transcription factor SPT20 homolog isoform X1

    3. XM_038509753.1 → XP_038365681.1  transcription factor SPT20 homolog isoform X3

    4. XM_038509748.1 → XP_038365676.1  transcription factor SPT20 homolog isoform X1

    5. XM_038509756.1 → XP_038365684.1  transcription factor SPT20 homolog isoform X5

    6. XM_038509749.1 → XP_038365677.1  transcription factor SPT20 homolog isoform X1

    7. XM_038509747.1 → XP_038365675.1  transcription factor SPT20 homolog isoform X1

    8. XM_038509758.1 → XP_038365686.1  transcription factor SPT20 homolog isoform X7

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_038509755.1 → XP_038365683.1  transcription factor SPT20 homolog isoform X5

    10. XM_038509757.1 → XP_038365685.1  transcription factor SPT20 homolog isoform X6

    11. XM_038509762.1 → XP_038365690.1  transcription factor SPT20 homolog isoform X11

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    12. XM_038509759.1 → XP_038365687.1  transcription factor SPT20 homolog isoform X8

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    13. XM_038509760.1 → XP_038365688.1  transcription factor SPT20 homolog isoform X9

    14. XM_038509754.1 → XP_038365682.1  transcription factor SPT20 homolog isoform X4

    15. XM_038509752.1 → XP_038365680.1  transcription factor SPT20 homolog isoform X2

    16. XM_038509763.1 → XP_038365691.1  transcription factor SPT20 homolog isoform X12

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_038509761.1 → XP_038365689.1  transcription factor SPT20 homolog isoform X10

    RNA

    1. XR_005344482.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

      Range
      3650940..3690848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038637446.1 → XP_038493374.1  transcription factor SPT20 homolog isoform X1

    2. XM_038637447.1 → XP_038493375.1  transcription factor SPT20 homolog isoform X1

    3. XM_038637449.1 → XP_038493377.1  transcription factor SPT20 homolog isoform X3

    4. XM_038637444.1 → XP_038493372.1  transcription factor SPT20 homolog isoform X1

    5. XM_038637452.1 → XP_038493380.1  transcription factor SPT20 homolog isoform X5

    6. XM_038637445.1 → XP_038493373.1  transcription factor SPT20 homolog isoform X1

    7. XM_038637443.1 → XP_038493371.1  transcription factor SPT20 homolog isoform X1

    8. XM_038637454.1 → XP_038493382.1  transcription factor SPT20 homolog isoform X7

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_038637451.1 → XP_038493379.1  transcription factor SPT20 homolog isoform X5

    10. XM_038637453.1 → XP_038493381.1  transcription factor SPT20 homolog isoform X6

    11. XM_038637458.1 → XP_038493386.1  transcription factor SPT20 homolog isoform X11

      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    12. XM_038637455.1 → XP_038493383.1  transcription factor SPT20 homolog isoform X8

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    13. XM_038637456.1 → XP_038493384.1  transcription factor SPT20 homolog isoform X9

    14. XM_038637450.1 → XP_038493378.1  transcription factor SPT20 homolog isoform X4

    15. XM_038637448.1 → XP_038493376.1  transcription factor SPT20 homolog isoform X2

    16. XM_038637459.1 → XP_038493387.1  transcription factor SPT20 homolog isoform X12

      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_038637457.1 → XP_038493385.1  transcription factor SPT20 homolog isoform X10

    RNA

    1. XR_005412207.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

      Range
      3722917..3762860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038573181.1 → XP_038429109.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    2. XM_038573182.1 → XP_038429110.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    3. XM_038573184.1 → XP_038429112.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8C0S2F1

    4. XM_038573179.1 → XP_038429107.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    5. XM_038573187.1 → XP_038429115.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1

    6. XM_038573180.1 → XP_038429108.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    7. XM_038573178.1 → XP_038429106.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1

    8. XM_038573189.1 → XP_038429117.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    9. XM_038573186.1 → XP_038429114.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1

    10. XM_038573188.1 → XP_038429116.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8C0S2F1

    11. XM_038573193.1 → XP_038429121.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    12. XM_038573190.1 → XP_038429118.1  transcription factor SPT20 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    13. XM_038573191.1 → XP_038429119.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8C0NG89

    14. XM_038573185.1 → XP_038429113.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8C0S2V6

    15. XM_038573183.1 → XP_038429111.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8C0S2F1

    16. XM_038573194.1 → XP_038429122.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650

    17. XM_038573192.1 → XP_038429120.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8C0NG89

    RNA

    1. XR_005378313.1 RNA Sequence

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      3688667..3728598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014107353.3 → XP_013962828.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    2. XM_014107355.3 → XP_013962830.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    3. XM_014107359.3 → XP_013962834.1  transcription factor SPT20 homolog isoform X7

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    4. XM_014107357.3 → XP_013962832.1  transcription factor SPT20 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    5. XM_005635442.4 → XP_005635499.1  transcription factor SPT20 homolog isoform X8

      See identical proteins and their annotated locations for XP_005635499.1

      UniProtKB/TrEMBL
      A0A8C0NIZ6, A0A8I3PVJ1, A0A8I3Q2F4, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    6. XM_038458383.1 → XP_038314311.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    7. XM_038458384.1 → XP_038314312.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    8. XM_022409600.2 → XP_022265308.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    9. XM_014107352.3 → XP_013962827.1  transcription factor SPT20 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    10. XM_014107356.3 → XP_013962831.1  transcription factor SPT20 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    11. XM_022409602.2 → XP_022265310.1  transcription factor SPT20 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:65 → 204
      Spt20; Spt20 family

    12. XM_038458385.1 → XP_038314313.1  transcription factor SPT20 homolog isoform X6

      UniProtKB/TrEMBL
      A0A8C0S2F1
      Conserved Domains (1) summary
      pfam12090
      Location:64 → 203
      Spt20; Spt20 family

    13. XM_005635450.4 → XP_005635507.1  transcription factor SPT20 homolog isoform X11

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    14. XM_005635447.4 → XP_005635504.1  transcription factor SPT20 homolog isoform X9

      UniProtKB/TrEMBL
      A0A8C0NG89
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    15. XM_014107358.3 → XP_013962833.1  transcription factor SPT20 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8C0S2V6
      Conserved Domains (1) summary
      pfam12090
      Location:77 → 216
      Spt20; Spt20 family

    16. XM_005635451.4 → XP_005635508.1  transcription factor SPT20 homolog isoform X12

      UniProtKB/TrEMBL
      A0A8I3PVJ1, A0A8P0P650
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    17. XM_843603.6 → XP_848696.1  transcription factor SPT20 homolog isoform X10

      UniProtKB/TrEMBL
      A0A8C0NG89
      Conserved Domains (1) summary
      pfam12090
      Location:76 → 215
      Spt20; Spt20 family

    RNA

    1. XR_002618953.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials