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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001267843.2 → NP_001254772.1 circadian locomoter output cycles protein kaput
See identical proteins and their annotated locations for NP_001254772.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC069200, BC041878
- Consensus CDS
-
CCDS3500.1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Related
- ENSP00000370723.1, ENST00000381322.5
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
-
NM_004898.4 → NP_004889.1 circadian locomoter output cycles protein kaput
See identical proteins and their annotated locations for NP_004889.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AC069200, AK223549, DA658950
- Consensus CDS
-
CCDS3500.1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Related
- ENSP00000426983.1, ENST00000513440.6
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
55427903..55546909 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011534410.3 → XP_011532712.1 circadian locomoter output cycles protein kaput isoform X1
See identical proteins and their annotated locations for XP_011532712.1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
-
XM_047416432.1 → XP_047272388.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_047416436.1 → XP_047272392.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_017008854.2 → XP_016864343.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
-
XM_047416433.1 → XP_047272389.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_011534411.3 → XP_011532713.1 circadian locomoter output cycles protein kaput isoform X1
See identical proteins and their annotated locations for XP_011532713.1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
-
XM_047416439.1 → XP_047272395.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_047416437.1 → XP_047272393.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_005265787.3 → XP_005265844.1 circadian locomoter output cycles protein kaput isoform X1
See identical proteins and their annotated locations for XP_005265844.1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
-
XM_047416431.1 → XP_047272387.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_047416434.1 → XP_047272390.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_047416435.1 → XP_047272391.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_024454284.2 → XP_024310052.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
- UniProtKB/TrEMBL
- Q3ZCT4, Q53EU0
- Conserved Domains (4) summary
-
- cd00083
Location:32 → 86
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- pfam00989
Location:109 → 175
- PAS; PAS fold
- pfam09606
Location:496 → 686
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl25986
Location:274 → 377
- PAS_3; PAS fold
-
XM_047416438.1 → XP_047272394.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_047416440.1 → XP_047272396.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
58916047..59035037 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054351289.1 → XP_054207264.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351290.1 → XP_054207265.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351294.1 → XP_054207269.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351288.1 → XP_054207263.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351292.1 → XP_054207267.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351297.1 → XP_054207272.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351301.1 → XP_054207276.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351296.1 → XP_054207271.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351293.1 → XP_054207268.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351295.1 → XP_054207270.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351300.1 → XP_054207275.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351302.1 → XP_054207277.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351291.1 → XP_054207266.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351299.1 → XP_054207274.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351298.1 → XP_054207273.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8
-
XM_054351303.1 → XP_054207278.1 circadian locomoter output cycles protein kaput isoform X1
- UniProtKB/Swiss-Prot
- A0AV01, A2I2N9, O14516, O15516, Q9UIT8