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    LOC110987571 PR domain zinc finger protein 16-like [ Acanthaster planci (crown-of-thorns starfish) ]

    Gene ID: 110987571, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC110987571
    Gene description
    PR domain zinc finger protein 16-like
    See related
    EnsemblRapid:LOC110987571
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthaster planci
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
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    Genomic context

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    See LOC110987571 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091551.1 (222975..368239)

    NW_019091551.1Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 2-like Neighboring gene cationic amino acid transporter 2-like Neighboring gene uncharacterized LOC110987572 Neighboring gene protein kinase C iota type-like Neighboring gene uncharacterized LOC110987568 Neighboring gene melatonin receptor type 1B-A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_019091551 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PR domain zinc finger protein 16-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference OKI-Apl_1.0 Primary Assembly

    Genomic

    1. NW_019091551.1 Reference OKI-Apl_1.0 Primary Assembly

      Range
      222975..368239
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022250401.1 → XP_022106093.1  PR domain zinc finger protein 16-like isoform X1

      UniProtKB/TrEMBL
      A0A8B7ZKE0
      Related
      XP_022106093.1, XM_022250401.1
      Conserved Domains (8) summary
      smart00317
      Location:95 → 204
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:301 → 582
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:908 → 928
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:425 → 443
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:906 → 928
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:920 → 944
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:369 → 445
      zf-C2H2_8; C2H2-type zinc ribbon
      cl26761
      Location:1017 → 1192
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

    2. XM_022250402.1 → XP_022106094.1  PR domain zinc finger protein 16-like isoform X2

      UniProtKB/TrEMBL
      A0A8B7ZKT2
      Related
      XP_022106094.1, XM_022250402.1
      Conserved Domains (8) summary
      smart00317
      Location:95 → 204
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:300 → 581
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:907 → 927
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:424 → 442
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:905 → 927
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:919 → 943
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:368 → 444
      zf-C2H2_8; C2H2-type zinc ribbon
      cl26761
      Location:1016 → 1191
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

    3. XM_022250403.1 → XP_022106095.1  PR domain zinc finger protein 16-like isoform X3

      UniProtKB/TrEMBL
      A0A8B7ZMH6
      Related
      XP_022106095.1, XM_022250403.1
      Conserved Domains (8) summary
      smart00317
      Location:77 → 186
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:283 → 564
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:890 → 910
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:407 → 425
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:888 → 910
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:902 → 926
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:351 → 427
      zf-C2H2_8; C2H2-type zinc ribbon
      cl26761
      Location:999 → 1174
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
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