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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009763.2Â RefSeqGene
- Range
-
5001..37982
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_590
mRNA and Protein(s)
-
NM_001349896.1 → NP_001336825.1  BLOC-3 complex member HPS4 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) encodes isoform a.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS13835.1
- UniProtKB/Swiss-Prot
- B1AHQ4, Q5H8V6, Q96LX6, Q9BY93, Q9NQG7, Q9UH37, Q9UH38
- UniProtKB/TrEMBL
-
Q6P1K3
- Related
- ENSP00000338457.5, ENST00000336873.9
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349898.2 → NP_001336827.1  BLOC-3 complex member HPS4 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) encodes isoform a.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS13835.1
- UniProtKB/Swiss-Prot
- B1AHQ4, Q5H8V6, Q96LX6, Q9BY93, Q9NQG7, Q9UH37, Q9UH38
- UniProtKB/TrEMBL
-
Q6P1K3
- Related
- ENSP00000514223.1, ENST00000473782.2
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349899.2 → NP_001336828.1  BLOC-3 complex member HPS4 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) encodes isoform a.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS13835.1
- UniProtKB/Swiss-Prot
- B1AHQ4, Q5H8V6, Q96LX6, Q9BY93, Q9NQG7, Q9UH37, Q9UH38
- UniProtKB/TrEMBL
-
Q6P1K3
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349900.2 → NP_001336829.1  BLOC-3 complex member HPS4 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) encodes isoform c.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS93140.1
- UniProtKB/TrEMBL
- F1LLU8, Q6P1K3
- Conserved Domains (1) summary
-
- cl28271
Location:432 → 549
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349901.1 → NP_001336830.1  BLOC-3 complex member HPS4 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) encodes isoform c.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS93140.1
- UniProtKB/TrEMBL
- F1LLU8, Q6P1K3
- Related
- ENSP00000415081.3, ENST00000422379.3
- Conserved Domains (1) summary
-
- cl28271
Location:432 → 549
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349902.1 → NP_001336831.1  BLOC-3 complex member HPS4 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) encodes isoform d.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS93138.1
- UniProtKB/TrEMBL
- A0A8V8TMY3, Q6P1K3
- Related
- ENSP00000514237.1, ENST00000699250.1
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349903.2 → NP_001336832.1  BLOC-3 complex member HPS4 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) encodes isoform d.
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS93138.1
- UniProtKB/TrEMBL
- A0A8V8TMY3, Q6P1K3
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349904.2 → NP_001336833.1  BLOC-3 complex member HPS4 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (12) encodes isoform e.
- Source sequence(s)
-
Z99714
- UniProtKB/TrEMBL
-
Q6P1K3
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001349905.1 → NP_001336834.1  BLOC-3 complex member HPS4 isoform e
Status: REVIEWED
- Description
- Transcript Variant: This variant (13) encodes isoform e.
- Source sequence(s)
-
Z99714
- UniProtKB/TrEMBL
-
Q6P1K3
- Related
-
ENST00000699228.1
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_001410832.1 → NP_001397761.1  BLOC-3 complex member HPS4 isoform f
Status: REVIEWED
- Source sequence(s)
-
Z99714
- Consensus CDS
-
CCDS93139.1
- UniProtKB/TrEMBL
-
A0A8V8TN06
-
NM_022081.6 → NP_071364.4  BLOC-3 complex member HPS4 isoform a
See identical proteins and their annotated locations for NP_071364.4
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AK290211, AY043416, BC065030, BQ185676, Z99714
- Consensus CDS
-
CCDS13835.1
- UniProtKB/Swiss-Prot
- B1AHQ4, Q5H8V6, Q96LX6, Q9BY93, Q9NQG7, Q9UH37, Q9UH38
- UniProtKB/TrEMBL
-
Q6P1K3
- Related
- ENSP00000381213.2, ENST00000398145.7
- Conserved Domains (1) summary
-
- cl28271
Location:414 → 531
- dnaA; chromosomal replication initiation protein; Provisional
-
NM_152841.2 → NP_690054.1  BLOC-3 complex member HPS4 isoform b
See identical proteins and their annotated locations for NP_690054.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) is shorter and has a distinct N-terminus, compared to isoform a.
- Source sequence(s)
-
AL365512, BQ185676, Z99714
- Consensus CDS
-
CCDS46677.1
- UniProtKB/TrEMBL
-
Q6P1K3
- Related
- ENSP00000384185.3, ENST00000402105.7
- Conserved Domains (1) summary
-
- PRK14086
Location:409 → 526
- dnaA; chromosomal replication initiation protein; Provisional
RNA
-
NR_073135.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site at the 5' end and at an internal region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL365512, BC028625, BC050285, BQ185676, Z99714
- Related
-
ENST00000699237.1
-
NR_073136.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs at the 5' end and contains multiple internal differences, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AY043416, BC028625, BC035614, BQ185676, Z99714
-
NR_146311.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (14) is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
Z99714
- Related
-
ENST00000699246.1
-
NR_146312.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (15) is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
Z99714
- Related
-
ENST00000699238.1
-
NR_146313.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (16) is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
Z99714
- Related
-
ENST00000699243.1
-
NR_146314.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (17) is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
Z99714
- Related
-
ENST00000699240.1
-
NR_146315.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (18) is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
Z99714
-
NR_146316.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (19) is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
Z99714
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000022.11Â Reference GRCh38.p14 Primary Assembly
- Range
-
26443109..26483863 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047441572.1 → XP_047297528.1  BLOC-3 complex member HPS4 isoform X7
-
XM_047441580.1 → XP_047297536.1  BLOC-3 complex member HPS4 isoform X9
-
XM_047441579.1 → XP_047297535.1  BLOC-3 complex member HPS4 isoform X9
-
XM_047441574.1 → XP_047297530.1  BLOC-3 complex member HPS4 isoform X7
-
XM_047441571.1 → XP_047297527.1  BLOC-3 complex member HPS4 isoform X7
-
XM_047441578.1 → XP_047297534.1  BLOC-3 complex member HPS4 isoform X9
-
XM_047441573.1 → XP_047297529.1  BLOC-3 complex member HPS4 isoform X7
-
XM_047441576.1 → XP_047297532.1  BLOC-3 complex member HPS4 isoform X8
-
XM_011530486.3 → XP_011528788.1  BLOC-3 complex member HPS4 isoform X1
See identical proteins and their annotated locations for XP_011528788.1
- UniProtKB/TrEMBL
-
Q6P1K3
- Conserved Domains (1) summary
-
- PRK14086
Location:458 → 575
- dnaA; chromosomal replication initiation protein; Provisional
-
XM_047441583.1 → XP_047297539.1  BLOC-3 complex member HPS4 isoform X10
- UniProtKB/TrEMBL
-
A0A8V8TMY3
-
XM_047441564.1 → XP_047297520.1  BLOC-3 complex member HPS4 isoform X4
- UniProtKB/Swiss-Prot
- B1AHQ4, Q5H8V6, Q96LX6, Q9BY93, Q9NQG7, Q9UH37, Q9UH38
-
XM_047441563.1 → XP_047297519.1  BLOC-3 complex member HPS4 isoform X3
- UniProtKB/TrEMBL
-
F1LLU8
-
XM_047441582.1 → XP_047297538.1  BLOC-3 complex member HPS4 isoform X10
- UniProtKB/TrEMBL
-
A0A8V8TMY3
-
XM_047441577.1 → XP_047297533.1  BLOC-3 complex member HPS4 isoform X8
-
XM_047441561.1 → XP_047297517.1  BLOC-3 complex member HPS4 isoform X3
- UniProtKB/TrEMBL
-
F1LLU8
- Related
- ENSP00000514231.1, ENST00000699242.1
-
XM_047441575.1 → XP_047297531.1  BLOC-3 complex member HPS4 isoform X8
-
XM_011530490.4 → XP_011528792.1  BLOC-3 complex member HPS4 isoform X2
- UniProtKB/TrEMBL
-
Q6P1K3
- Conserved Domains (1) summary
-
- PRK14086
Location:440 → 557
- dnaA; chromosomal replication initiation protein; Provisional
-
XM_047441581.1 → XP_047297537.1  BLOC-3 complex member HPS4 isoform X10
- UniProtKB/TrEMBL
-
A0A8V8TMY3
-
XM_047441562.1 → XP_047297518.1  BLOC-3 complex member HPS4 isoform X3
- UniProtKB/TrEMBL
-
F1LLU8
-
XM_011530496.3 → XP_011528798.1  BLOC-3 complex member HPS4 isoform X13
See identical proteins and their annotated locations for XP_011528798.1
- UniProtKB/TrEMBL
-
B3KTD7
- Conserved Domains (1) summary
-
- PRK14086
Location:194 → 311
- dnaA; chromosomal replication initiation protein; Provisional
-
XM_011530495.3 → XP_011528797.1  BLOC-3 complex member HPS4 isoform X12
See identical proteins and their annotated locations for XP_011528797.1
- UniProtKB/TrEMBL
-
B3KTD7
- Conserved Domains (1) summary
-
- PRK14086
Location:243 → 360
- dnaA; chromosomal replication initiation protein; Provisional
-
XM_017029053.2 → XP_016884542.1  BLOC-3 complex member HPS4 isoform X11
-
XM_047441584.1 → XP_047297540.1  BLOC-3 complex member HPS4 isoform X14
- UniProtKB/TrEMBL
-
A0A8V8TPB3
- Related
- ENSP00000514224.1, ENST00000699235.1
-
XM_047441568.1 → XP_047297524.1  BLOC-3 complex member HPS4 isoform X6
- UniProtKB/TrEMBL
-
A0A8V8TN06
- Related
- ENSP00000514238.1, ENST00000699251.1
-
XM_047441566.1 → XP_047297522.1  BLOC-3 complex member HPS4 isoform X5
-
XM_047441567.1 → XP_047297523.1  BLOC-3 complex member HPS4 isoform X5
-
XM_017029046.3 → XP_016884535.1  BLOC-3 complex member HPS4 isoform X6
- UniProtKB/TrEMBL
- A0A8V8TN06, Q6P1K3
-
XM_047441565.1 → XP_047297521.1  BLOC-3 complex member HPS4 isoform X5
-
XM_047441569.1 → XP_047297525.1  BLOC-3 complex member HPS4 isoform X6
- UniProtKB/TrEMBL
-
A0A8V8TN06
RNA
-
XR_001755364.2 RNA Sequence
-
XR_007067985.1 RNA Sequence
-
XR_007067983.1 RNA Sequence
-
XR_007067986.1 RNA Sequence
-
XR_007067987.1 RNA Sequence
-
XR_007067984.1 RNA Sequence
-
XR_007067989.1 RNA Sequence
-
XR_007067988.1 RNA Sequence
-
XR_001755361.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060946.1Â Alternate T2T-CHM13v2.0
- Range
-
26905547..26946273 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326103.1 → XP_054182078.1  BLOC-3 complex member HPS4 isoform X9
-
XM_054326102.1 → XP_054182077.1  BLOC-3 complex member HPS4 isoform X9
-
XM_054326101.1 → XP_054182076.1  BLOC-3 complex member HPS4 isoform X9
-
XM_054326097.1 → XP_054182072.1  BLOC-3 complex member HPS4 isoform X7
-
XM_054326099.1 → XP_054182074.1  BLOC-3 complex member HPS4 isoform X8
-
XM_054326081.1 → XP_054182056.1  BLOC-3 complex member HPS4 isoform X1
-
XM_054326106.1 → XP_054182081.1  BLOC-3 complex member HPS4 isoform X10
-
XM_054326090.1 → XP_054182065.1  BLOC-3 complex member HPS4 isoform X4
- UniProtKB/TrEMBL
-
A8K2E6
-
XM_054326089.1 → XP_054182064.1  BLOC-3 complex member HPS4 isoform X3
-
XM_054326084.1 → XP_054182059.1  BLOC-3 complex member HPS4 isoform X1
-
XM_054326105.1 → XP_054182080.1  BLOC-3 complex member HPS4 isoform X10
-
XM_054326100.1 → XP_054182075.1  BLOC-3 complex member HPS4 isoform X8
-
XM_054326087.1 → XP_054182062.1  BLOC-3 complex member HPS4 isoform X3
-
XM_054326082.1 → XP_054182057.1  BLOC-3 complex member HPS4 isoform X1
-
XM_054326098.1 → XP_054182073.1  BLOC-3 complex member HPS4 isoform X8
-
XM_054326085.1 → XP_054182060.1  BLOC-3 complex member HPS4 isoform X2
-
XM_054326080.1 → XP_054182055.1  BLOC-3 complex member HPS4 isoform X1
-
XM_054326104.1 → XP_054182079.1  BLOC-3 complex member HPS4 isoform X10
-
XM_054326088.1 → XP_054182063.1  BLOC-3 complex member HPS4 isoform X3
-
XM_054326086.1 → XP_054182061.1  BLOC-3 complex member HPS4 isoform X2
-
XM_054326083.1 → XP_054182058.1  BLOC-3 complex member HPS4 isoform X1
-
XM_054326095.1 → XP_054182070.1  BLOC-3 complex member HPS4 isoform X6
-
XM_054326092.1 → XP_054182067.1  BLOC-3 complex member HPS4 isoform X5
-
XM_054326093.1 → XP_054182068.1  BLOC-3 complex member HPS4 isoform X5
-
XM_054326094.1 → XP_054182069.1  BLOC-3 complex member HPS4 isoform X6
-
XM_054326091.1 → XP_054182066.1  BLOC-3 complex member HPS4 isoform X5
-
XM_054326096.1 → XP_054182071.1  BLOC-3 complex member HPS4 isoform X6
RNA
-
XR_008485429.1 RNA Sequence
-
XR_008485424.1 RNA Sequence
-
XR_008485422.1 RNA Sequence
-
XR_008485425.1 RNA Sequence
-
XR_008485426.1 RNA Sequence
-
XR_008485423.1 RNA Sequence
-
XR_008485428.1 RNA Sequence
-
XR_008485427.1 RNA Sequence
-
XR_008485421.1 RNA Sequence
-
XR_008485420.1 RNA Sequence
-
XR_008485419.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_152840.1: Suppressed sequence
- Description
- NM_152840.1: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
-
NM_152842.1: Suppressed sequence
- Description
- NM_152842.1: This RefSeq was permanently suppressed because it is a nonsense-mediated decay (NMD) candidate.
-
NM_152843.1: Suppressed sequence
- Description
- NM_152843.1: This RefSeq was permanently suppressed because currently there is not sufficient data to support this transcript.