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    FAT1 FAT atypical cadherin 1 [ Gallus gallus (chicken) ]

    Gene ID: 395168, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FAT1provided by CGNC
    Official Full Name
    FAT atypical cadherin 1provided by CGNC
    Primary source
    CGNC:10185
    See related
    Ensembl:ENSGALG00010013371
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    FAT
    Orthologs
    human mouse all
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    Genomic context

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    See FAT1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (61214407..61315036, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (61202131..61301411, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751736 Neighboring gene uncharacterized LOC107053254 Neighboring gene melatonin receptor 1A Neighboring gene uncharacterized LOC121110728 Neighboring gene uncharacterized LOC124417938

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The expression of Fat-1 cadherin during chick limb development. Smith TG, et al. Int J Dev Biol, 2007. PMID 17294369
    2. Identification of a nonchordate-type classic cadherin in vertebrates: chicken Hz-cadherin is expressed in horizontal cells of the neural retina and contains a nonchordate-specific domain complex. Tanabe K, et al. Dev Dyn, 2004 Apr. PMID 15042713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin Fat 1; LOW QUALITY PROTEIN: protocadherin Fat 1
    Names
    FAT tumor suppressor homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      61214407..61315036 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015285559.4 → XP_015141045.2  protocadherin Fat 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDW1, A0A8V0YS26
      Related
      ENSGALP00010018997.1, ENSGALT00010032207.1
      Conserved Domains (4) summary
      cd11304
      Location:3258 → 3355
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:278 → 357
      CA; Cadherin repeats
      smart00282
      Location:3880 → 4011
      LamG; Laminin G domain
      cd00054
      Location:4153 → 4189
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    2. XM_040699960.2 → XP_040555894.1  protocadherin Fat 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDW1, A0A8V0YS26
      Conserved Domains (4) summary
      cd11304
      Location:3258 → 3355
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:278 → 357
      CA; Cadherin repeats
      smart00282
      Location:3880 → 4011
      LamG; Laminin G domain
      cd00054
      Location:4153 → 4189
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    3. XM_015285560.4 → XP_015141046.2  protocadherin Fat 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDW1, A0A8V0YS26
      Related
      ENSGALP00010018987.1, ENSGALT00010032197.1
      Conserved Domains (4) summary
      cd11304
      Location:3258 → 3355
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:278 → 357
      CA; Cadherin repeats
      smart00282
      Location:3880 → 4011
      LamG; Laminin G domain
      cd00054
      Location:4153 → 4189
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    4. XM_040699959.2 → XP_040555893.1  protocadherin Fat 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0YDW1, A0A8V0YS26
      Conserved Domains (4) summary
      cd11304
      Location:3258 → 3355
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:278 → 357
      CA; Cadherin repeats
      smart00282
      Location:3880 → 4011
      LamG; Laminin G domain
      cd00054
      Location:4153 → 4189
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      61202131..61301411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040671310.2 → XP_040527244.1  LOW QUALITY PROTEIN: protocadherin Fat 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0YDW1
      Conserved Domains (4) summary
      cd11304
      Location:3235 → 3332
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:278 → 357
      CA; Cadherin repeats
      smart00282
      Location:3857 → 3988
      LamG; Laminin G domain
      cd00054
      Location:4130 → 4166
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    Nucleotide Protein
    Heading Accession and Version

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