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    ZBTB7B zinc finger and BTB domain containing 7B [ Homo sapiens (human) ]

    Gene ID: 51043, updated on 2-Nov-2024

    Summary

    Official Symbol
    ZBTB7Bprovided by HGNC
    Official Full Name
    zinc finger and BTB domain containing 7Bprovided by HGNC
    Primary source
    HGNC:HGNC:18668
    See related
    Ensembl:ENSG00000160685 MIM:607646; AllianceGenome:HGNC:18668
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    vGAF; CKROX; THPOK; ZFP67; ZBTB15; ZFP-67; c-KROX; hcKROX; ZNF857B
    Summary
    This gene encodes a zinc finger-containing transcription factor that acts as a key regulator of lineage commitment of immature T-cell precursors. It is necessary and sufficient for commitment of CD4 lineage, while its absence causes CD8 commitment. It also functions as a transcriptional repressor of type I collagen genes. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2012]
    Expression
    Broad expression in skin (RPKM 39.5), duodenum (RPKM 31.2) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See ZBTB7B in Genome Data Viewer
    Location:
    1q21.3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (155001750..155018523)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (154140715..154157896)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (154975125..154990999)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154958088-154958777 Neighboring gene flavin adenine dinucleotide synthetase 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154971857-154972809 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1375 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1376 Neighboring gene lens epithelial protein Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1377 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154977250-154977922 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:154980166-154980880 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:154982382-154983131 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:154984631-154985378 Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 1:154989823 Neighboring gene DC-STAMP domain containing 2 Neighboring gene DC-STAMP domain containing 1 Neighboring gene DCST1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1802

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    A novel common variant in DCST2 is associated with length in early life and height in adulthood.
    EBI GWAS Catalog
    Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
    EBI GWAS Catalog

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • DKFZp686G01254

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables DNA-binding transcription repressor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone deacetylase binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables sequence-specific double-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in NK T cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in adaptive thermogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in ectoderm development TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in lactation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of CD8-positive, alpha-beta T cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of NK T cell proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of T-helper 17 cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of CD4-positive, alpha-beta T cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of SREBP signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of brown fat cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of cold-induced thermogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in positive regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in positive regulation of gene expression ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of insulin receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of interleukin-17 production ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in response to insulin ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in transcription by RNA polymerase II TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Preferred Names
    zinc finger and BTB domain-containing protein 7B
    Names
    T-helper-inducing POZ/Krueppel-like factor
    krueppel-related zinc finger protein cKrox
    zinc finger and BTB domain containing 15
    zinc finger protein 67 homolog
    zinc finger protein 857B
    zinc finger protein Th-POK

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252406.3NP_001239335.1  zinc finger and BTB domain-containing protein 7B isoform 2

      See identical proteins and their annotated locations for NP_001239335.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the longer isoform (2).
      Source sequence(s)
      AI270090, AK304762, AL451085, BC012070, CV572166, DB241444
      Consensus CDS
      CCDS58030.1
      UniProtKB/TrEMBL
      A8K6F4
      Related
      ENSP00000406286.2, ENST00000417934.6
      Conserved Domains (3) summary
      sd00017
      Location:410430
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:43176
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:397419
      zf-H2C2_2; Zinc-finger double domain
    2. NM_001256455.2NP_001243384.1  zinc finger and BTB domain-containing protein 7B isoform 1

      See identical proteins and their annotated locations for NP_001243384.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) lacks two alternate exons in the 5' UTR and 5' coding region, and uses a downstream in-frame start codon, comapred to variant 3. The encoded isoform (1) is shorter at the N-terminus, compared to isoform 2.
      Source sequence(s)
      AI270090, AL451085, BC012070, CV572166
      Consensus CDS
      CCDS1081.1
      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Related
      ENSP00000438647.1, ENST00000535420.6
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    3. NM_001377451.1NP_001364380.1  zinc finger and BTB domain-containing protein 7B isoform 2

      Status: REVIEWED

      Source sequence(s)
      AL451085
      Consensus CDS
      CCDS58030.1
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (3) summary
      sd00017
      Location:410430
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:43176
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:397419
      zf-H2C2_2; Zinc-finger double domain
    4. NM_001377452.1NP_001364381.1  zinc finger and BTB domain-containing protein 7B isoform 1

      Status: REVIEWED

      Source sequence(s)
      AL451085
      Consensus CDS
      CCDS1081.1
      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    5. NM_001377453.1NP_001364382.1  zinc finger and BTB domain-containing protein 7B isoform 1

      Status: REVIEWED

      Source sequence(s)
      AL451085
      Consensus CDS
      CCDS1081.1
      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Related
      ENSP00000357411.3, ENST00000368426.3
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    6. NM_001377454.1NP_001364383.1  zinc finger and BTB domain-containing protein 7B isoform 1

      Status: REVIEWED

      Source sequence(s)
      AL451085
      Consensus CDS
      CCDS1081.1
      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    7. NM_001377455.1NP_001364384.1  zinc finger and BTB domain-containing protein 7B isoform 1

      Status: REVIEWED

      Source sequence(s)
      AL451085
      Consensus CDS
      CCDS1081.1
      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      155001750..155018523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047421851.1XP_047277807.1  zinc finger and BTB domain-containing protein 7B isoform X2

    2. XM_006711359.3XP_006711422.1  zinc finger and BTB domain-containing protein 7B isoform X5

      See identical proteins and their annotated locations for XP_006711422.1

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    3. XM_047421865.1XP_047277821.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    4. XM_047421871.1XP_047277827.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      Related
      ENSP00000292176.2, ENST00000292176.2
    5. XM_047421852.1XP_047277808.1  zinc finger and BTB domain-containing protein 7B isoform X3

    6. XM_047421858.1XP_047277814.1  zinc finger and BTB domain-containing protein 7B isoform X4

    7. XM_047421894.1XP_047277850.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    8. XM_011509599.3XP_011507901.1  zinc finger and BTB domain-containing protein 7B isoform X5

      See identical proteins and their annotated locations for XP_011507901.1

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    9. XM_047421853.1XP_047277809.1  zinc finger and BTB domain-containing protein 7B isoform X4

    10. XM_047421876.1XP_047277832.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    11. XM_047421868.1XP_047277824.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    12. XM_047421854.1XP_047277810.1  zinc finger and BTB domain-containing protein 7B isoform X4

    13. XM_047421883.1XP_047277839.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    14. XM_017001399.2XP_016856888.1  zinc finger and BTB domain-containing protein 7B isoform X1

      UniProtKB/TrEMBL
      A8K6F4
    15. XM_006711356.4XP_006711419.1  zinc finger and BTB domain-containing protein 7B isoform X5

      See identical proteins and their annotated locations for XP_006711419.1

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
      UniProtKB/TrEMBL
      A8K6F4
      Conserved Domains (4) summary
      COG5048
      Location:345424
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:376396
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd18327
      Location:9142
      BTB_POZ_ZBTB7B_ZBTB15; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 7B (ZBTB7B)
      pfam13465
      Location:363385
      zf-H2C2_2; Zinc-finger double domain
    16. XM_047421863.1XP_047277819.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      154140715..154157896
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054336854.1XP_054192829.1  zinc finger and BTB domain-containing protein 7B isoform X2

    2. XM_054336857.1XP_054192832.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    3. XM_054336860.1XP_054192835.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    4. XM_054336862.1XP_054192837.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    5. XM_054336856.1XP_054192831.1  zinc finger and BTB domain-containing protein 7B isoform X4

    6. XM_054336859.1XP_054192834.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    7. XM_054336855.1XP_054192830.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    8. XM_054336863.1XP_054192838.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    9. XM_054336853.1XP_054192828.1  zinc finger and BTB domain-containing protein 7B isoform X1

    10. XM_054336861.1XP_054192836.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2
    11. XM_054336858.1XP_054192833.1  zinc finger and BTB domain-containing protein 7B isoform X5

      UniProtKB/Swiss-Prot
      B4E3K5, D3DV83, J3KQQ3, O15156, Q68DR2, Q96EP2