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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001081376.1 → NP_001074845.1 chromodomain-helicase-DNA-binding protein 5 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AL611985
- Consensus CDS
-
CCDS38984.1
- UniProtKB/TrEMBL
-
E9PYL1
- Related
- ENSMUSP00000030775.6, ENSMUST00000030775.12
- Conserved Domains (10) summary
-
- smart00298
Location:594 → 648
- CHROMO; Chromatin organization modifier domain
- cd00046
Location:722 → 880
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- pfam00176
Location:705 → 1001
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1025 → 1140
- Helicase_C; Helicase conserved C-terminal domain
- pfam06461
Location:1390 → 1531
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1300 → 1360
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:153 → 202
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1730 → 1901
- CHDCT2; CHDCT2 (NUC038) domain
-
NM_001369243.1 → NP_001356172.1 chromodomain-helicase-DNA-binding protein 5 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AL611985
- Consensus CDS
-
CCDS89866.1
- UniProtKB/Swiss-Prot
- A2A8L1, Q6ZQB2
- Related
- ENSMUSP00000005175.5, ENSMUST00000005175.5
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1218
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1532 → 1684
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- pfam06461
Location:1390 → 1531
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam08074
Location:1730 → 1901
- CHDCT2; CHDCT2 (NUC038) domain
- pfam06465
Location:1300 → 1359
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:153 → 203
- CHDNT; CHDNT (NUC034) domain
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
-
NM_029216.2 → NP_083492.2 chromodomain-helicase-DNA-binding protein 5 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon, compared to variant 1. It encodes isoform 2 which is shorter than isoform 1.
- Source sequence(s)
-
AL611985
- Consensus CDS
-
CCDS51394.1
- UniProtKB/TrEMBL
-
E9PYU4
- Related
- ENSMUSP00000132600.2, ENSMUST00000164662.8
- Conserved Domains (10) summary
-
- smart00298
Location:594 → 648
- CHROMO; Chromatin organization modifier domain
- cd00046
Location:722 → 880
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- pfam00176
Location:705 → 1001
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:1025 → 1140
- Helicase_C; Helicase conserved C-terminal domain
- pfam06461
Location:1353 → 1494
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1263 → 1323
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:153 → 202
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1693 → 1864
- CHDCT2; CHDCT2 (NUC038) domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000070.7 Reference GRCm39 C57BL/6J
- Range
-
152423103..152474651
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006538929.2 → XP_006538992.1 chromodomain-helicase-DNA-binding protein 5 isoform X1
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1218
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1535 → 1687
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1393 → 1534
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1300 → 1359
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:148 → 203
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1733 → 1904
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_006538933.2 → XP_006538996.1 chromodomain-helicase-DNA-binding protein 5 isoform X5
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1240
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1498 → 1650
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1356 → 1497
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1263 → 1322
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:148 → 203
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1696 → 1867
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_006538930.2 → XP_006538993.1 chromodomain-helicase-DNA-binding protein 5 isoform X2
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1217
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1534 → 1686
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1392 → 1533
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1299 → 1358
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:148 → 203
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1732 → 1903
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_017320244.2 → XP_017175733.1 chromodomain-helicase-DNA-binding protein 5 isoform X3
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1217
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1531 → 1683
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1389 → 1530
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1299 → 1358
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:148 → 203
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1729 → 1900
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_006538931.2 → XP_006538994.1 chromodomain-helicase-DNA-binding protein 5 isoform X4
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1218
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1535 → 1687
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1393 → 1534
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1300 → 1359
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:148 → 203
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1733 → 1904
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_006538935.2 → XP_006538998.1 chromodomain-helicase-DNA-binding protein 5 isoform X7
- Conserved Domains (10) summary
-
- PLN03142
Location:700 → 1218
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1535 → 1687
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:347 → 389
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:420 → 462
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:591 → 644
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:467 → 546
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1393 → 1534
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1300 → 1359
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:148 → 203
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1733 → 1860
- CHDCT2; CHDCT2 (NUC038) domain
-
XM_030253589.1 → XP_030109449.1 chromodomain-helicase-DNA-binding protein 5 isoform X6
- Conserved Domains (10) summary
-
- PLN03142
Location:626 → 1144
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- PRK13108
Location:1461 → 1613
- PRK13108; prolipoprotein diacylglyceryl transferase; Reviewed
- cd15531
Location:273 → 315
- PHD1_CHD_II; PHD finger 1 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd15532
Location:346 → 388
- PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
- cd18662
Location:517 → 570
- CD2_tandem_CHD3-4_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- cd18667
Location:393 → 472
- CD1_tandem_CHD3-4_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 3 and 4, and similar proteins
- pfam06461
Location:1319 → 1460
- DUF1086; Domain of Unknown Function (DUF1086)
- pfam06465
Location:1226 → 1285
- DUF1087; Domain of Unknown Function (DUF1087)
- pfam08073
Location:74 → 129
- CHDNT; CHDNT (NUC034) domain
- pfam08074
Location:1659 → 1830
- CHDCT2; CHDCT2 (NUC038) domain