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    znf410 zinc finger protein 410 [ Danio rerio (zebrafish) ]

    Gene ID: 402951, updated on 19-Jun-2024

    Summary

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    Official Symbol
    znf410provided by ZNC
    Official Full Name
    zinc finger protein 410provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1817
    See related
    Ensembl:ENSDARG00000008218 AllianceGenome:ZFIN:ZDB-GENE-040426-1817
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:77303
    Summary
    Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF410 (zinc finger protein 410). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See znf410 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (54349338..54360183)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (54559957..54570843)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene placental growth factor a Neighboring gene CLOCK-interacting pacemaker b Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5b Neighboring gene leucine rich repeat and fibronectin type III domain containing 5b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC77303

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coregulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 410

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205653.1 → NP_991216.1  zinc finger protein 410

      See identical proteins and their annotated locations for NP_991216.1

      Status: PROVISIONAL

      Source sequence(s)
      BC065642
      UniProtKB/TrEMBL
      Q6P0F3
      Related
      ENSDARP00000120027.1, ENSDART00000147542.3
      Conserved Domains (2) summary
      sd00017
      Location:251 → 273
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:295 → 320
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      54349338..54360183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009295041.3 → XP_009293316.1  zinc finger protein 410 isoform X1

      UniProtKB/TrEMBL
      A0A8M3ALU5
      Conserved Domains (3) summary
      COG5048
      Location:215 → 399
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:251 → 273
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:295 → 320
      zf-H2C2_2; Zinc-finger double domain

    2. XM_005170226.4 → XP_005170283.1  zinc finger protein 410 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BHJ7, E7F8R1
      Related
      ENSDARP00000123606.1, ENSDART00000132168.3
      Conserved Domains (2) summary
      sd00017
      Location:251 → 273
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:295 → 320
      zf-H2C2_2; Zinc-finger double domain

    3. XM_005170228.3 → XP_005170285.1  zinc finger protein 410 isoform X4

      UniProtKB/TrEMBL
      A0A8M2BHL4
      Conserved Domains (3) summary
      sd00017
      Location:224 → 243
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:265 → 291
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:221 → 305
      zf-C2H2_8; C2H2-type zinc ribbon

    4. XM_005170227.4 → XP_005170284.1  zinc finger protein 410 isoform X3

      UniProtKB/TrEMBL
      A0A8M2BI17
      Conserved Domains (3) summary
      sd00017
      Location:224 → 243
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:265 → 291
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:221 → 305
      zf-C2H2_8; C2H2-type zinc ribbon

    5. XM_017352450.2 → XP_017207939.1  zinc finger protein 410 isoform X3

      UniProtKB/TrEMBL
      A0A8M2BI17
      Conserved Domains (3) summary
      sd00017
      Location:224 → 243
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:265 → 291
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:221 → 305
      zf-C2H2_8; C2H2-type zinc ribbon
    Nucleotide Protein
    Heading Accession and Version

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