U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cfap97 cilia and flagella associated protein 97 [ Mus musculus (house mouse) ]

    Gene ID: 66756, updated on 28-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Cfap97provided by MGI
    Official Full Name
    cilia and flagella associated protein 97provided by MGI
    Primary source
    MGI:MGI:1914006
    See related
    Ensembl:ENSMUSG00000031631 AllianceGenome:MGI:1914006
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Kiaa1430; 1110068E21Rik; 4933411K20Rik
    Summary
    Predicted to be involved in spermatogenesis. Orthologous to human CFAP97 (cilia and flagella associated protein 97). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in testis adult (RPKM 30.1), limb E14.5 (RPKM 4.2) and 22 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Cfap97 in Genome Data Viewer
    Location:
    8 B1.1; 8 26.16 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (46615515..46648627)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (46162095..46195590)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene Lrp2 binding protein Neighboring gene sorting nexin 25 Neighboring gene STARR-seq mESC enhancer starr_21377 Neighboring gene STARR-positive B cell enhancer ABC_E10497 Neighboring gene predicted gene 15634 Neighboring gene STARR-positive B cell enhancer ABC_E10498 Neighboring gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 Neighboring gene actin, gamma, pseudogene 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Aug 31. PMID 14621295
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in spermatogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cilia- and flagella-associated protein 97

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357215.2 → NP_001344144.1  cilia- and flagella-associated protein 97 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      Consensus CDS
      CCDS22288.1
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462
      UniProtKB/TrEMBL
      E9Q1K1
      Conserved Domains (1) summary
      pfam13879
      Location:353 → 455
      KIAA1430; KIAA1430 homolog

    2. NM_001357216.2 → NP_001344145.1  cilia- and flagella-associated protein 97 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      Consensus CDS
      CCDS22288.1
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462
      UniProtKB/TrEMBL
      E9Q1K1
      Conserved Domains (1) summary
      pfam13879
      Location:353 → 455
      KIAA1430; KIAA1430 homolog

    3. NM_001428466.1 → NP_001415395.1  cilia- and flagella-associated protein 97 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462

    4. NM_001428467.1 → NP_001415396.1  cilia- and flagella-associated protein 97 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462

    5. NM_001428468.1 → NP_001415397.1  cilia- and flagella-associated protein 97 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462

    6. NM_001428469.1 → NP_001415398.1  cilia- and flagella-associated protein 97 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462

    7. NM_001428470.1 → NP_001415399.1  cilia- and flagella-associated protein 97 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551

    8. NM_025747.5 → NP_080023.1  cilia- and flagella-associated protein 97 isoform 1

      See identical proteins and their annotated locations for NP_080023.1

      Status: VALIDATED

      Source sequence(s)
      AC114558, AC156551
      Consensus CDS
      CCDS22288.1
      UniProtKB/Swiss-Prot
      Q6ZPR1, Q9D462
      UniProtKB/TrEMBL
      E9Q1K1
      Related
      ENSMUSP00000034048.7, ENSMUST00000034048.13
      Conserved Domains (1) summary
      pfam13879
      Location:353 → 455
      KIAA1430; KIAA1430 homolog

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      46615515..46648627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509478.5 → XP_006509541.1  cilia- and flagella-associated protein 97 isoform X1

      Conserved Domains (1) summary
      pfam13879
      Location:353 → 455
      KIAA1430; KIAA1430 homolog

    2. XM_006509479.4 → XP_006509542.1  cilia- and flagella-associated protein 97 isoform X1

      Conserved Domains (1) summary
      pfam13879
      Location:353 → 455
      KIAA1430; KIAA1430 homolog

    3. XM_006509477.5 → XP_006509540.1  cilia- and flagella-associated protein 97 isoform X1

      Related
      ENSMUSP00000106005.2, ENSMUST00000110376.8
      Conserved Domains (1) summary
      pfam13879
      Location:353 → 455
      KIAA1430; KIAA1430 homolog
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZPR1.2 GenPept UniProtKB/Swiss-Prot:Q6ZPR1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools