pcdh2g13 protocadherin 2 gamma 13 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pcdh2g13provided by ZNC
Official Full Name: protocadherin 2 gamma 13provided by ZNC
Primary source: ZFIN:ZDB-GENE-050610-3
See related: Ensembl:ENSDARG00000098788 AllianceGenome:ZFIN:ZDB-GENE-050610-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 14

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (1889679..2032409, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (1715094..2114058, complement)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc45f08 (e-PCR), detects polymorphism
- UniSTS:189190

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within homophilic cell adhesion via plasma membrane adhesion molecules	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protocadherin 2 gamma 13

Names: protocadherin cluster 2 gamma 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001024185.1 → NP_001019356.1 protocadherin 2 gamma 13 precursor

See identical proteins and their annotated locations for NP_001019356.1

Status: PROVISIONAL

Source sequence(s)

AY583025

UniProtKB/TrEMBL

I6LD61

Related

ENSDARP00000103345.3, ENSDART00000111335.3

Conserved Domains (4) summary

cd11304
Location:456 → 557

Cadherin_repeat; Cadherin tandem repeat domain

pfam08266
Location:29 → 111

Cadherin_2; Cadherin-like

pfam15974
Location:803 → 949

Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region

pfam16492
Location:684 → 768

Cadherin_C_2; Cadherin cytoplasmic C-terminal