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    LOC100274707 uncharacterized LOC100274707 [ Zea mays ]

    Gene ID: 100274707, updated on 23-Dec-2022

    Summary

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    Gene symbol
    LOC100274707
    Gene description
    uncharacterized LOC100274707
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    THX39; GRMZM2G001272; GRMZM2G301122
    Annotation information
    Annotation category: suggests misassembly
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    Genomic context

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    See LOC100274707 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (8604289..8610301, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (8719184..8724964, complement)

    Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103640815 Neighboring gene uncharacterized LOC100281492 Neighboring gene uncharacterized LOC100280005 Neighboring gene uncharacterized LOC100502370

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100274707
    Names
    GT1 superfamily protein
    trihelix transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001149012.1 → NP_001142484.1  uncharacterized protein LOC100274707

      See identical proteins and their annotated locations for NP_001142484.1

      Status: PREDICTED

      Source sequence(s)
      EU952198
      UniProtKB/TrEMBL
      A0A3L6G7W9, A0A8J8Y8J4, B6SHI3
      Conserved Domains (2) summary
      pfam13837
      Location:118 → 204
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      cl25549
      Location:361 → 437
      ARGLU; Arginine and glutamate-rich 1

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      8604289..8610301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008663450.4 → XP_008661672.1  uncharacterized protein LOC100274707 isoform X1

      See identical proteins and their annotated locations for XP_008661672.1

      UniProtKB/TrEMBL
      K7TEY9
      Conserved Domains (2) summary
      pfam13837
      Location:118 → 204
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      pfam15346
      Location:361 → 437
      ARGLU; Arginine and glutamate-rich 1

    2. XM_008663449.4 → XP_008661671.1  uncharacterized protein LOC100274707 isoform X1

      See identical proteins and their annotated locations for XP_008661671.1

      UniProtKB/TrEMBL
      K7TEY9
      Conserved Domains (2) summary
      pfam13837
      Location:118 → 204
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
      pfam15346
      Location:361 → 437
      ARGLU; Arginine and glutamate-rich 1
    Nucleotide Protein
    Heading Accession and Version

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