2EBI


Conserved Protein Domain Family
Myb_DNA-bind_4

?
pfam13837: Myb_DNA-bind_4 (this model, PSSM-Id:290549 is obsolete and has been replaced by 463994)
Click on image for an interactive view with Cn3D
Myb/SANT-like DNA-binding domain
This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.
Statistics
?
PSSM-Id: 290549
Aligned: 151 rows
Threshold Bit Score: 39.9658
Created: 30-Jun-2015
Updated: 5-Aug-2015
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2EBI_A         4 AETWVQDETRSLIMFRRGmd--gLFNTs----------KSNKhLWEQISSK----MR-EK----GF--D--RSPDMCTDK 58  thale cress
Q9ZQN7        19 KGNWTVSETLVLIEAKKMdd-qrRVRRsekqp--egrnKPAElRWKWIEEY----CW-RR----GC--Y--RNQNQCNDK 82  thale cress
XP_001987287   6 sdgWQVEETITLIGILKSl----KESNga--------gKMCKfDWLQVANQ----MA-QN----GV--N--RSILELRER 60  Drosophila grim...
XP_001630016 281 SSKWSDAETRYLLSIWKNkyp--------------iskKRNYkVWEAIAKEfnkhMA-NE----GItqY--RTGIQCRKR 339 starlet sea ane...
XP_001630016  59 GTKWSDAENRYLIAIWKTrlp--------------iakKKSIyIWESIAEE----LN-QKnsveGI--NafRTATQCRSR 117 starlet sea ane...
XP_001781910  56 kgNWTSAEILVLQAARREdf--eRVRRgnlk----erhKSAQeRWKWIEDY----SW-SQ----GV--H--RSAQQCQDK 116 Physcomitrella ...
XP_001751263  54 SSNWSEAETIQLLLLRKAqlqnkEErr---------acPKGSsAWDEIASQ----LK-DK----FI--P--RSGKHVGER 111 Physcomitrella ...
XP_001778199 218 GTAAVSCERRQRSRNWSNeekdsFLIEmena----vgkCNGK-VWDSISKA----LLdGY----KF--E--RSAKSCEDL 280 Physcomitrella ...
XP_002322303  36 HPRWTRQETFVLIESKKVve--nRFQWsrrstsalgsdQIES-KWDSVSSY----CS-QH----GV--N--RGPVQCRKR 99  black cottonwood
XP_001772272  54 SAPWTVTEMLTLIEAKKEer--eRCQEyksq----gvkLPAAeKWRIVAMH----ME-TK----EM--E--RSGSQCQDK 114 Physcomitrella ...
2EBI_A        59 WRNLLKEFKKAKHHDrGNGSaKMS-Y----------------------YKE 86  thale cress
Q9ZQN7        83 WDNLMRDYKKIREYErSRVE-SSFnTvts-----------------ssYWK 115 thale cress
XP_001987287  61 FKQLRMDYREANVCD----S-TCQ-Y----------------------YNY 83  Drosophila grimshawi
XP_001630016 340 VKTLEDEFKKIKITG-KDPE-TFD-Y----------------------YDD 365 starlet sea anemone
XP_001630016 118 MRHLEDDYKKAKNVSdG-EE-KFL-Y----------------------YKD 143 starlet sea anemone
XP_001781910 117 WELLVSEFKKVHDYEkSLPE-GQK-S----------------------YWD 143 Physcomitrella patens
XP_001751263 112 WDTLRRVYMDIEEHCsEHQK-TYAeV----------------------LDA 139 Physcomitrella patens
XP_001778199 281 WGTLRKEFKASKFSQvF-PE-R---W----------------------YET 304 Physcomitrella patens
XP_002322303 100 WGNMLCDFKKIKTWEsQQMN-ETE-S----------------------FWM 126 black cottonwood
XP_001772272 115 WENMMKDYKAVREWQyVSGG-GAKdYfkdmtnkerkdaslppqmdeivFYS 164 Physcomitrella patens
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap