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    ESB1 Disease resistance-responsive (dirigent-like protein) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817416, updated on 15-Oct-2023

    Summary

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    Gene symbol
    ESB1
    Gene description
    Disease resistance-responsive (dirigent-like protein) family protein
    Primary source
    Araport:AT2G28670
    Locus tag
    AT2G28670
    See related
    TAIR:AT2G28670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ENHANCED SUBERIN 1; T8O18.4; T8O18_4
    Summary
    esb1 mutants have increased levels of suberin and altered levels of several ions in their leaves.
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    Genomic context

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    See ESB1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12300265..12302358, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein H8 Neighboring gene Chloroplast-targeted copper chaperone protein Neighboring gene uncharacterized protein Neighboring gene RmlC-like cupins superfamily protein Neighboring gene TOX high mobility group box protein, putative (DUF1635)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dirigent domain-containing protein is part of the machinery required for formation of the lignin-based Casparian strip in the root. Hosmani PS, et al. Proc Natl Acad Sci U S A, 2013 Aug 27. PMID 23940370, Free PMC Article
    2. Root suberin forms an extracellular barrier that affects water relations and mineral nutrition in Arabidopsis. Baxter I, et al. PLoS Genet, 2009 May. PMID 19461889, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001161067.1
    NM_001336184.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lignin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within suberin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Casparian strip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Disease resistance-responsive (dirigent-like protein) family protein
    NP_001154539.1
    • Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT1G07730.2); Has 754 Blast hits to 754 proteins in 40 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 744; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_001318306.1
    • Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT1G07730.2); Has 149387 Blast hits to 52063 proteins in 2552 species: Archae - 249; Bacteria - 55746; Metazoa - 39096; Fungi - 9081; Plants - 13630; Viruses - 2093; Other Eukaryotes - 29492 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12300265..12302358 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001161067.1 → NP_001154539.1  Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154539.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SIA8
      Conserved Domains (1) summary
      pfam03018
      Location:95 → 224
      Dirigent; Dirigent-like protein

    2. NM_001336184.1 → NP_001318306.1  Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IIT2, Q9SIA8
      UniProtKB/TrEMBL
      A0A178VMM7, A0A2H1ZE31, A0A5S9X2L3
    Nucleotide Protein
    Heading Accession and Version

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