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Conserved domains on  [gi|238479389|ref|NP_001154539|]
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Disease resistance-responsive (dirigent-like protein) family protein [Arabidopsis thaliana]

Protein Classification

dirigent protein( domain architecture ID 10503400)

dirigent protein may be involved in lignification in plants and imparts stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Dirigent pfam03018
Dirigent-like protein; This family contains a number of proteins which are induced during ...
 87-224 4.97e-26

Dirigent-like protein; This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification.


:

Pssm-ID: 460780  Cd Length: 145  Bit Score: 98.37  E-value: 4.97e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238479389   87 PVASGGQLPSGSalqmLMFGTMTVIDDELTEGHELGSGLLGKAQGYYVASAIDGTSQTMAFTAMFESGGYEDS-ISFFGV 165
Cdd:pfam03018  20 TVAGPPPPGNSS----TPFGTVVVFDDPLTEGPDSTSKLVGRAQGLYVSASQDELGLLMAFNFVFTDGEYNGStLSVLGR 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 238479389  166 LRT-AVSESHIGVMGGTGKYVNARGFAILKTFTGSSGTqqnqphqftdgLETVVECTVYL 224
Cdd:pfam03018  96 NPVfEEVTRELAVVGGTGDFRMARGYALLRTHSVDSTT-----------GDAVVEYDVYV 144
 
Name Accession Description Interval E-value
Dirigent pfam03018
Dirigent-like protein; This family contains a number of proteins which are induced during ...
 87-224 4.97e-26

Dirigent-like protein; This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification.


Pssm-ID: 460780  Cd Length: 145  Bit Score: 98.37  E-value: 4.97e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238479389   87 PVASGGQLPSGSalqmLMFGTMTVIDDELTEGHELGSGLLGKAQGYYVASAIDGTSQTMAFTAMFESGGYEDS-ISFFGV 165
Cdd:pfam03018  20 TVAGPPPPGNSS----TPFGTVVVFDDPLTEGPDSTSKLVGRAQGLYVSASQDELGLLMAFNFVFTDGEYNGStLSVLGR 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 238479389  166 LRT-AVSESHIGVMGGTGKYVNARGFAILKTFTGSSGTqqnqphqftdgLETVVECTVYL 224
Cdd:pfam03018  96 NPVfEEVTRELAVVGGTGDFRMARGYALLRTHSVDSTT-----------GDAVVEYDVYV 144
 
Name Accession Description Interval E-value
Dirigent pfam03018
Dirigent-like protein; This family contains a number of proteins which are induced during ...
 87-224 4.97e-26

Dirigent-like protein; This family contains a number of proteins which are induced during disease response in plants. Members of this family are involved in lignification.


Pssm-ID: 460780  Cd Length: 145  Bit Score: 98.37  E-value: 4.97e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 238479389   87 PVASGGQLPSGSalqmLMFGTMTVIDDELTEGHELGSGLLGKAQGYYVASAIDGTSQTMAFTAMFESGGYEDS-ISFFGV 165
Cdd:pfam03018  20 TVAGPPPPGNSS----TPFGTVVVFDDPLTEGPDSTSKLVGRAQGLYVSASQDELGLLMAFNFVFTDGEYNGStLSVLGR 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 238479389  166 LRT-AVSESHIGVMGGTGKYVNARGFAILKTFTGSSGTqqnqphqftdgLETVVECTVYL 224
Cdd:pfam03018  96 NPVfEEVTRELAVVGGTGDFRMARGYALLRTHSVDSTT-----------GDAVVEYDVYV 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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