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    OBP2B odorant binding protein 2B [ Sus scrofa (pig) ]

    Gene ID: 396861, updated on 5-Mar-2024

    Summary

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    Gene symbol
    OBP2B
    Gene description
    odorant binding protein 2B
    See related
    Ensembl:ENSSSCG00000035964
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    VEG; LCN1; VEGP
    Expression
    Biased expression in lung (RPKM 42.3) and mixtures (RPKM 12.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See OBP2B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (272886871..272890537)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003540920.1 (1..1223, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003541284.1 (599..1993)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256503 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase Neighboring gene surfeit 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Why has porcine VEG protein unusually high stability and suppressed binding ability? Burova TV, et al. Biochim Biophys Acta, 2000 May 23. PMID 10825538
    2. Regional localization of porcine MYOD1, MYF5, LEP, UCP3 and LCN1 genes. Cepica S, et al. Anim Genet, 1999 Dec. PMID 10612255
    3. Structure and organization of the porcine LCN1 gene encoding Tear lipocalin/von Ebner's gland protein. Holzfeind P, et al. Gene, 1997 Nov 20. PMID 9427546
    4. Porcine VEG proteins and tear prealbumins. Garibotti M, et al. Chem Senses, 1995 Feb. PMID 7796060
    5. Functional characterization of olfactory binding proteins for appeasing compounds and molecular cloning in the vomeronasal organ of pre-pubertal pigs. Guiraudie G, et al. Chem Senses, 2003 Sep. PMID 14578123

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. involvement in the detection of appeasing compounds in the nasal mucosa and the vomeronasal organ of pre-pubertal pigs
      Title: Functional characterization of olfactory binding proteins for appeasing compounds and molecular cloning in the vomeronasal organ of pre-pubertal pigs.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipocalin-1
    Names
    TP
    Von Ebner gland protein
    lipocalin 1 (tear prealbumin)
    tear lipocalin
    tear prealbumin
    tlc
    von Ebner's lingual gland protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213856.2 → NP_999021.2  lipocalin-1 precursor

      See identical proteins and their annotated locations for NP_999021.2

      Status: PROVISIONAL

      Source sequence(s)
      S77587
      UniProtKB/Swiss-Prot
      O19136, P53715
      UniProtKB/TrEMBL
      A0A8D0P9U5, A0A8D1PNS6, Q866S8
      Related
      ENSSSCP00000049533.1, ENSSSCT00000061957.2
      Conserved Domains (1) summary
      pfam00061
      Location:33 → 169
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      272886871..272890537
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021082121.1 → XP_020937780.1  lipocalin-1 isoform X1

      Conserved Domains (1) summary
      pfam00061
      Location:1 → 129
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P53715.1 GenPept UniProtKB/Swiss-Prot:P53715

    Gene LinkOut

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