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LOC9320944 uncharacterized protein C18orf8 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9320944, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9320944
Gene description
uncharacterized protein C18orf8
Locus tag
ARALYDRAFT_897410
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See LOC9320944 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (4849165..4854977)

NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9318826 Neighboring gene S-locus-specific glycoprotein Neighboring gene uncharacterized LOC110230272 Neighboring gene kinesin-like protein KIN-7K, chloroplastic Neighboring gene calcium load-activated calcium channel

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mon1-Ccz1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C18orf8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302553.1 Reference v.1.0 Primary Assembly

    Range
    4849165..4854977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021032566.1 → XP_020888225.1  uncharacterized protein C18orf8 isoform X2

    UniProtKB/TrEMBL
    D7KZN3
    Conserved Domains (3) summary
    sd00039
    Location:34 → 68
    7WD40; WD40 repeat [structural motif]
    pfam07035
    Location:516 → 663
    Mic1; Colon cancer-associated protein Mic1-like
    pfam12894
    Location:37 → 124
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

  2. XM_021032567.1 → XP_020888226.1  uncharacterized protein C18orf8 isoform X2

    UniProtKB/TrEMBL
    D7KZN3
    Conserved Domains (3) summary
    sd00039
    Location:34 → 68
    7WD40; WD40 repeat [structural motif]
    pfam07035
    Location:516 → 663
    Mic1; Colon cancer-associated protein Mic1-like
    pfam12894
    Location:37 → 124
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

  3. XM_021032563.1 → XP_020888222.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    D7KZN3
    Conserved Domains (3) summary
    sd00039
    Location:35 → 69
    7WD40; WD40 repeat [structural motif]
    pfam07035
    Location:517 → 664
    Mic1; Colon cancer-associated protein Mic1-like
    pfam12894
    Location:38 → 125
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

  4. XM_021032565.1 → XP_020888224.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    D7KZN3
    Conserved Domains (3) summary
    sd00039
    Location:35 → 69
    7WD40; WD40 repeat [structural motif]
    pfam07035
    Location:517 → 664
    Mic1; Colon cancer-associated protein Mic1-like
    pfam12894
    Location:38 → 125
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

  5. XM_021032564.1 → XP_020888223.1  uncharacterized protein C18orf8 isoform X1

    UniProtKB/TrEMBL
    D7KZN3
    Conserved Domains (3) summary
    sd00039
    Location:35 → 69
    7WD40; WD40 repeat [structural motif]
    pfam07035
    Location:517 → 664
    Mic1; Colon cancer-associated protein Mic1-like
    pfam12894
    Location:38 → 125
    ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
Nucleotide Protein
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