U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cbr-lron-11 Protein CBR-LRON-11 [ Caenorhabditis briggsae ]

Gene ID: 8581505, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
Cbr-lron-11
Gene description
Protein CBR-LRON-11
Locus tag
CBG_04117
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Caenorhabditis briggsae (strain: AF16)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Cbr-lron-11 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_013489.2 (3909548..3914092, complement)

Chromosome I - NC_013489.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-YOP-1 Neighboring gene Protein CBG04116 Neighboring gene Protein CBG25258 Neighboring gene Protein CBG04119

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_013489.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Protein CBR-LRON-11
XP_002639512.1
  • C. briggsae CBR-LRON-11 protein; contains similarity to Pfam domains PF00560 (Leucine Rich Repeat) (5), PF12799 (Leucine Rich repeats (2 copies)) contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype);
    Predicted

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013489.2 Reference assembly

    Range
    3909548..3914092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002639466.1 → XP_002639512.1  Protein CBR-LRON-11 [Caenorhabditis briggsae]

    See identical proteins and their annotated locations for XP_002639512.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAE9DRT7, A0AAE9DYR2, A8WW90
    Conserved Domains (3) summary
    cd00116
    Location:50 → 227
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:48 → 71
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:118 → 177
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials