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ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817616, updated on 18-Sep-2024

Summary

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Official Full Name
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Primary source
TAIR:AT2G30660
Locus tag
AT2G30660
See related
Araport:AT2G30660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T11J7.5; T11J7_5
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (13058250..13061675, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene callose synthase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001336278.1
NM_128618.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in valine catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
NP_180624.2
  • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13058250..13061675 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128618.4 → NP_180624.2  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180624.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49331, Q6NMB0
    UniProtKB/TrEMBL
    A0A178VLJ3, A0A5S9X2T9, A0A7G2EEC8
    Conserved Domains (1) summary
    cl23717
    Location:1 → 375
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...

  2. NM_001336278.1 → NP_001324604.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VLJ3, A0A1P8B0L8, A0A5S9X2T9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NMB0.1

Gene LinkOut

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