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nif3l1.S NGG1 interacting factor 3 like 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779400, updated on 4-Nov-2024

Summary

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Official Symbol
nif3l1.S
Official Full Name
NGG1 interacting factor 3 like 1 S homeolog
Primary source
Xenbase:XB-GENE-6078750
Locus tag
XELAEV_18047959mg
See related
EnsemblRapid:ENSXLAG00005009626 AllianceGenome:Xenbase:XB-GENE-6078750
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nif3l1; nif3l1.L
Summary
Predicted to be located in mitochondrion and nucleus. Orthologous to human NIF3L1 (NGG1 interacting factor 3 like 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nif3l1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (111394110..111400188)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (103616484..103622518)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121398921 Neighboring gene peptidylprolyl isomerase like 3 S homeolog Neighboring gene phosphoribosylformylglycinamidine synthase S homeolog Neighboring gene epidermis specific serine protease S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154449

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NGG1 interacting factor 3 like 1 S homeolog
Names
NGG1 interacting factor 3 like 1 L homeolog
NIF3 NGG1 interacting factor 3-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097018.1 → NP_001090487.1  NGG1 interacting factor 3 like 1 S homeolog

    See identical proteins and their annotated locations for NP_001090487.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123210
    UniProtKB/TrEMBL
    Q0IHC9
    Conserved Domains (1) summary
    pfam01784
    Location:6 → 324
    NIF3; NIF3 (NGG1p interacting factor 3)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    111394110..111400188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237647.2 → XP_018093136.1  NGG1 interacting factor 3 like 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8ERE3, A0A974BWA8
    Related
    ENSXLAP00005028163.1, ENSXLAT00005028900.1
Nucleotide Protein Strain
Heading Accession and Version

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