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TEX28P1 TEX28 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 728447, updated on 27-Aug-2024

Summary

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Official Symbol
TEX28P1provided by HGNC
Official Full Name
TEX28 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33356
See related
Ensembl:ENSG00000274962 AllianceGenome:HGNC:33356
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
pTEX
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Genomic context

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Location:
Xq28
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (154196321..154217295, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (152469983..152490933, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (153461812..153482764, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene opsin locus control region Neighboring gene opsin 1, long wave sensitive Neighboring gene TEX28 pseudogene 2 Neighboring gene opsin 1, medium wave sensitive Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153490111-153490612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153490613-153491112 Neighboring gene opsin 1, medium wave sensitive 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:153495190-153495690 Neighboring gene TEX28 pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An insertion/deletion TEX28 polymorphism and its application to analysis of red/green visual pigment gene arrays. Ueyama H, et al. J Hum Genet, 2004. PMID 15378397
  2. Identification of a gene within the tandem array of red and green color pigment genes. Hanna MC, et al. Genomics, 1997 Aug 1. PMID 9268643

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • testis expressed 28 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005787.5 

    Range
    94..21068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    154196321..154217295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    152469983..152490933 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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