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calypso ubiquitin carboxyl-terminal hydrolase calypso [ Apis mellifera (honey bee) ]

Gene ID: 725780, updated on 2-Oct-2024

Summary

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Gene symbol
calypso
Gene description
ubiquitin carboxyl-terminal hydrolase calypso
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB45189
Orthologs
fruit fly all
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Genomic context

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See calypso in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
8
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG11 NC_037648.1 (13681546..13686262)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG11 NC_007080.3 (11938193..11943027)

Linkage Group LG11 - NC_037648.1Genomic Context describing neighboring genes Neighboring gene estradiol 17-beta-dehydrogenase 11 Neighboring gene uncharacterized LOC102654161 Neighboring gene chitinase domain-containing protein 1 Neighboring gene ataxin-2 homolog Neighboring gene uncharacterized LOC107965194 Neighboring gene transfer RNA histidin (anticodon GUG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  2. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  3. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase calypso

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037648.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    13681546..13686262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026443859.1 → XP_026299644.1  ubiquitin carboxyl-terminal hydrolase calypso isoform X1

    UniProtKB/TrEMBL
    A0A7M7MQV1, A0A8B8H9S4
    Conserved Domains (2) summary
    cd09617
    Location:12 → 239
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
    pfam18031
    Location:512 → 557
    UCH_C; Ubiquitin carboxyl-terminal hydrolases

  2. XM_026443860.1 → XP_026299645.1  ubiquitin carboxyl-terminal hydrolase calypso isoform X2

    UniProtKB/TrEMBL
    A0A7M7MQU5, A0A8B8H6K9
    Conserved Domains (2) summary
    cd09617
    Location:12 → 239
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
    pfam18031
    Location:511 → 556
    UCH_C; Ubiquitin carboxyl-terminal hydrolases
Nucleotide Protein Strain
Heading Accession and Version

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