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CHD1 chromodomain helicase DNA binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 702070, updated on 17-Aug-2024

Summary

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Official Symbol
CHD1provided by VGNC
Official Full Name
chromodomain helicase DNA binding protein 1provided by VGNC
Primary source
VGNC:VGNC:71026
See related
Ensembl:ENSMMUG00000014090
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CHD1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
39
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (96224757..96301945, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (95796611..95871528, complement)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106998871 Neighboring gene uncharacterized LOC106998872

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromodomain-helicase-DNA-binding protein 1
XP_001097125.1
XP_028705438.1
XP_028705439.1
XP_028705440.1
XP_028705441.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    96224757..96301945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849605.1 → XP_028705438.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QDQ5
    Conserved Domains (6) summary
    PLN03142
    Location:470 → 1006
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam08648
    Location:1678 → 1787
    DUF1777; Protein of unknown function (DUF1777)
    pfam13907
    Location:1510 → 1592
    DUF4208; Domain of unknown function (DUF4208)
    cd18661
    Location:393 → 449
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:282 → 360
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:466 → 703
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_028849606.1 → XP_028705439.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZGM0
    Conserved Domains (6) summary
    PLN03142
    Location:466 → 1002
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam08648
    Location:1674 → 1783
    DUF1777; Protein of unknown function (DUF1777)
    pfam13907
    Location:1506 → 1588
    DUF4208; Domain of unknown function (DUF4208)
    cd18661
    Location:389 → 445
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:278 → 356
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:462 → 699
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  3. XM_001097125.4 → XP_001097125.1  chromodomain-helicase-DNA-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A1D5RAG7, A0A5F7ZGM0
    Related
    ENSMMUP00000057308.2, ENSMMUT00000073038.2
    Conserved Domains (8) summary
    cd00024
    Location:308 → 357
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:502 → 647
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:486 → 767
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:805 → 904
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:392 → 445
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
    pfam08648
    Location:1557 → 1659
    DUF1777; Protein of unknown function (DUF1777)
    pfam11496
    Location:720 → 973
    HDA2-3; Class II histone deacetylase complex subunits 2 and 3
    pfam13907
    Location:1409 → 1500
    DUF4208; Domain of unknown function (DUF4208)

  4. XM_028849607.1 → XP_028705440.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5QDQ5, F7C8A6
    Related
    ENSMMUP00000018527.4, ENSMMUT00000019790.4
    Conserved Domains (7) summary
    PLN03142
    Location:470 → 1006
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam05110
    Location:1287 → 1407
    AF-4; AF-4 proto-oncoprotein
    pfam08648
    Location:1590 → 1699
    DUF1777; Protein of unknown function (DUF1777)
    pfam13907
    Location:1422 → 1504
    DUF4208; Domain of unknown function (DUF4208)
    cd18661
    Location:393 → 449
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:282 → 360
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:466 → 703
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  5. XM_028849608.1 → XP_028705441.1  chromodomain-helicase-DNA-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A1D5QDQ5
    Conserved Domains (5) summary
    PLN03142
    Location:470 → 1006
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    pfam13907
    Location:1510 → 1571
    DUF4208; Domain of unknown function (DUF4208)
    cd18661
    Location:393 → 449
    CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cd18666
    Location:282 → 360
    CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
    cl28899
    Location:466 → 703
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
Nucleotide Protein
Heading Accession and Version

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