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Ns1 Nucleostemin 1 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 663428, updated on 10-May-2024

Summary

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Gene symbol
Ns1
Gene description
Nucleostemin 1
Locus tag
TcasGA2_TC012725
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See Ns1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (24218407..24220518)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (13709005..13711076)

Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 2 Neighboring gene probable rRNA-processing protein EBP2 homolog Neighboring gene calponin homology domain-containing protein DDB_G0272472 Neighboring gene PR domain zinc finger protein 10 Neighboring gene anaphase-promoting complex subunit 7 Neighboring gene U4/U6.U5 tri-snRNP-associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
guanine nucleotide-binding protein-like 3 homolog
Names
AUGUSTUS-3.0.2_12725
GLEAN_12725

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

    Range
    24218407..24220518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_969474.5 → XP_974567.2  guanine nucleotide-binding protein-like 3 homolog

    See identical proteins and their annotated locations for XP_974567.2

    UniProtKB/TrEMBL
    D6WZU0
    Conserved Domains (4) summary
    cd00882
    Location:264 → 387
    Ras_like_GTPase; Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)
    cd04178
    Location:147 → 315
    Nucleostemin_like; A circularly permuted subfamily of the Ras GTPases
    TIGR03596
    Location:137 → 405
    GTPase_YlqF; ribosome biogenesis GTP-binding protein YlqF
    pfam08701
    Location:16 → 94
    GN3L_Grn1; GNL3L/Grn1 putative GTPase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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