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Tmtc2 Transmembrane O-mannosyltransferase targeting cadherins 2 [ Drosophila sechellia ]

Gene ID: 6617322, updated on 15-May-2024

Summary

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Gene symbol
Tmtc2
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 2
Locus tag
Dsec_GM16781
See related
EnsemblRapid:LOC6617322
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM16781; GM16782; GM16781-PA; GM16782-PA
Orthologs
fruit fly all
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Genomic context

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See Tmtc2 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2L NC_045949.1 (960853..988592)

Chromosome 2L - NC_045949.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116803602 Neighboring gene Glutamate receptor IIC Neighboring gene tyrosine phosphatase IA-2 Neighboring gene bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 Neighboring gene germinal nascent polypeptide-associated complex alpha subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045949.1 Chromosome 2L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2
Names
Dsec\GM16781
Dsec\GM16781-PA
Dsec\GM16782
Dsec\GM16782-PA
dsec_GLEANR_17945
dsec_GLEANR_17946

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045949.1 Reference ASM438219v1

    Range
    960853..988592
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032724622.1 → XP_032580513.1  protein O-mannosyl-transferase TMTC2 isoform X2

    Related
    XP_032580513.1, XM_032724622.1
    Conserved Domains (4) summary
    COG0457
    Location:563 → 805
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:604 → 632
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:275 → 343
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:113 → 261
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase

  2. XM_002041611.2 → XP_002041647.2  protein O-mannosyl-transferase TMTC2 isoform X1

    Related
    XP_002041647.2, XM_002041611.2
    Conserved Domains (4) summary
    TIGR02917
    Location:571 → 934
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:604 → 632
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:275 → 343
    DUF1736; Domain of unknown function (DUF1736)
    cl21590
    Location:113 → 261
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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