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Conserved domains on  [gi|1818118441|ref|XP_032580513|]
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protein O-mannosyl-transferase TMTC2 isoform X2 [Drosophila sechellia]

Protein Classification

DUF1736 and TPR domain-containing protein( domain architecture ID 12091460)

DUF1736 and TPR domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
599-802 4.59e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 125.12  E-value: 4.59e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 599 IAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYL 676
Cdd:COG0457     1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 677 NLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrev 756
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAE-----------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD---- 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1818118441 757 LYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 270-343 9.59e-31

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


:

Pssm-ID: 462468  Cd Length: 75  Bit Score: 115.32  E-value: 9.59e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818118441 270 GPQTAFSSADNPIARTPSVWTRFLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTTLWDRRNAQSACFYSVLV 343
Cdd:pfam08409   2 GQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
599-802 4.59e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 125.12  E-value: 4.59e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 599 IAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYL 676
Cdd:COG0457     1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 677 NLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrev 756
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAE-----------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD---- 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1818118441 757 LYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 270-343 9.59e-31

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 115.32  E-value: 9.59e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818118441 270 GPQTAFSSADNPIARTPSVWTRFLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTTLWDRRNAQSACFYSVLV 343
Cdd:pfam08409   2 GQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 595-820 5.47e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 85.91  E-value: 5.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 595 YRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLA 672
Cdd:TIGR02917 216 YRKAIALRPnnIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 673 VAYLNLGISFIALGKRQQAIEILQAgsnldgasVRDRTAHD-QARssayLQLGALYAEQGKLQRALAIYREALSSLPGLP 751
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQ--------ILKYAPNShQAR----RLLASIQLRLGRVDEAIATLSPALGLDPDDP 363

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1818118441 752 QQREVLyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITlarnpRLGGGDVVQA--SLETGAR 820
Cdd:TIGR02917 364 AALSLL----GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS-----KLSQGDPSEAiaDLETAAQ 425
TPR_11 pfam13414
TPR repeat;
611-652 7.97e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 49.01  E-value: 7.97e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1818118441 611 GSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQ 652
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 616-747 2.90e-07

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.02  E-value: 2.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 616 SQGRYEEAKQVLQEAIRFRPNMADVHFNLGILH-QNQQVyPAAVECFQRAIKFRPNL-AVAYLNLG--------ISFIal 685
Cdd:cd24142    12 DQGNFELALKFLQRALELEPNNVEALELLGEILlELGDV-EEAREVLLRAIELDPDGgYEKYLYLGqlsggeeaLQYY-- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 686 gkrQQAIEILQAG-SNLDGASVRDRTAHDQAR---SSAYLQLGALY---------AEQ---GKLQRALAIYR---EALSS 746
Cdd:cd24142    89 ---EKGIEILEEElQALQAASAEAEEEAEELKrklSSALCALAEIYmtdlcdepdAEQrceELITKALELDPtnpEALQT 165


                  .
gi 1818118441 747 L 747
Cdd:cd24142   166 L 166
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 592-789 5.76e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.08  E-value: 5.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441  592 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQ--------------QVYP 655
Cdd:PRK11447   289 IPELQQAVRANPkdSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRywlliqqgdaalkaNNLA 368

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441  656 AAVECFQRAIKFRPNLAVAYLNLGisfialgkrqqaiEILQAGSNLDGASVRDRTA--HDQARSSAYLQLGALYAEQGKl 733
Cdd:PRK11447   369 QAERLYQQARQVDNTDSYAVLGLG-------------DVAMARKDYAAAERYYQQAlrMDPGNTNAVRGLANLYRQQSP- 434

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441  734 QRALAIyreaLSSLPGlPQQREV----------LYQRIGDVLGRLQQWDEAERHHRAALELQPNQV 789
Cdd:PRK11447   435 EKALAF----IASLSA-SQRRSIddierslqndRLAQQAEALENQGKWAQAAELQRQRLALDPGSV 495
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 638-670 2.48e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 2.48e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1818118441  638 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 670
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
599-802 4.59e-32

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 125.12  E-value: 4.59e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 599 IAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYL 676
Cdd:COG0457     1 LELDPddAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 677 NLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrev 756
Cdd:COG0457    81 NLGLALQALGRYEEALEDYDKALELDPDDAE-----------ALYNLGLALLELGRYDEAIEAYERALELDPDDAD---- 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1818118441 757 LYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191
TMTC_DUF1736 pfam08409
Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in ...
 270-343 9.59e-31

Protein O-mannosyl-transferase TMTC, DUF1736; This domain of unknown function is found in O-mannosyl -transferases TMTC1-4, and constitutes a loop between TM7 and TM8 located in the ER lumen that contains a small hydrophobic, but not membrane-embedded helix. This loop is critical for catalysis and binding of ligands, especially the lipid-linked sugar moiety. TMTCs transfers mannosyl residues to the hydroxyl group of serine or threonine residues. The 4 members of the TMTC family are O-mannosyl-transferases acting primarily on the cadherin superfamily; each member has distinct roles in decorating the cadherin domains with O-linked mannose glycans at specific regions. These proteins also act as O-mannosyl-transferase on other proteins such as PDIA3.


Pssm-ID: 462468  Cd Length: 75  Bit Score: 115.32  E-value: 9.59e-31
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818118441 270 GPQTAFSSADNPIARTPSVWTRFLTFLYLPVFNLRLLLQPNVLSFDWGMDALPRVTTLWDRRNAQSACFYSVLV 343
Cdd:pfam08409   2 GQLPVFSASDNPAAFSPSLLTRTLTYNYLPALNAWLLLFPSWLCFDWSMGSIPLIESLSDPRNLATLAFYGALA 75
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
580-802 7.92e-30

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 118.57  E-value: 7.92e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 657
Cdd:COG0457    16 LAYRRLGRYEEAIEDYEKALELDPddAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEA 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 658 VECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVrdrtahdqarsSAYLQLGALYAEQGKLQRAL 737
Cdd:COG0457    96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA-----------DALYNLGIALEKLGRYEEAL 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1818118441 738 AIYREALSSLPGLPQQREVLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:COG0457   165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 594-796 9.52e-27

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 110.59  E-value: 9.52e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 594 LYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNL 671
Cdd:COG2956    30 LLEEALELDPetVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 672 AVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLP 751
Cdd:COG2956   110 AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH-----------AYCELAELYLEQGDYDEAIEALEKALKLDPDCA 178

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1818118441 752 QqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYG 796
Cdd:COG2956   179 R----ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 580-787 5.22e-26

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 108.66  E-value: 5.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 657
Cdd:COG2956    50 NLYRRRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 658 VECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRAL 737
Cdd:COG2956   130 IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR-----------ALLLLAELYLEQGDYEEAI 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1818118441 738 AIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPN 787
Cdd:COG2956   199 AALERALEQDPDYLP----ALPRLAELYEKLGDPEEALELLRKALELDPS 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
580-768 5.03e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 104.70  E-value: 5.03e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 657
Cdd:COG0457    50 LAYLRLGRYEEALADYEQALELDPddAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 658 VECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVRDRTAHDQARSSAYLQLGALYAEQGKLQRAL 737
Cdd:COG0457   130 IEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1818118441 738 AIYREALSSLPGLPQQREVLYQRIGDVLGRL 768
Cdd:COG0457   210 KLAILTLAALAELLLLALALLLALRLAALAL 240
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 566-702 2.65e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 108.93  E-value: 2.65e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 566 LLLSFSVLLAAMSLRTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFN 643
Cdd:COG3914    72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPdnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1818118441 644 LGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLD 702
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 617-796 1.73e-23

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 100.96  E-value: 1.73e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 617 QGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQ 696
Cdd:COG2956    21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLE 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 697 AGSNLDGASVrdrtahdqarsSAYLQLGALYAEQGKLQRALAIYREALSSLPglpqQREVLYQRIGDVLGRLQQWDEAER 776
Cdd:COG2956   101 KLLELDPDDA-----------EALRLLAEIYEQEGDWEKAIEVLERLLKLGP----ENAHAYCELAELYLEQGDYDEAIE 165

                         170       180
                  ....*....|....*....|
gi 1818118441 777 HHRAALELQPNQVAAHLSYG 796
Cdd:COG2956   166 ALEKALKLDPDCARALLLLA 185
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 592-785 3.38e-23

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 100.19  E-value: 3.38e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 592 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRP 669
Cdd:COG2956    96 EELLEKLLELDPddAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDP 175

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 670 NLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVrdrtahdqarsSAYLQLGALYAEQGKLQRALAIYREALSSLPG 749
Cdd:COG2956   176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL-----------PALPRLAELYEKLGDPEEALELLRKALELDPS 244

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1818118441 750 LPqqrevLYQRIGDVLGRLQQWDEAERHHRAALELQ 785
Cdd:COG2956   245 DD-----LLLALADLLERKEGLEAALALLERQLRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 619-829 1.30e-22

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 103.53  E-value: 1.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 619 RYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAG 698
Cdd:COG3914    59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 699 SNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHH 778
Cdd:COG3914   139 LALNPDFAE-----------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAY 203

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1818118441 779 RAALELQPNQVAAHLSYGITLARNPRLGGGDVVQASLETGARSGQCISSLC 829
Cdd:COG3914   204 RRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFA 254
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
571-745 3.36e-21

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 93.06  E-value: 3.36e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 571 SVLLAAMSLRTLRRNADWRDEESLYRSAIAiNPPKALG--NLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILH 648
Cdd:COG4785    39 IALADLALALAAAALAAAALAAERIDRALA-LPDLAQLyyERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAY 117

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 649 QNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASV---------RDRTAHDQARSSA 719
Cdd:COG4785   118 LLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPeralwlylaERKLDPEKALALL 197

                         170       180
                  ....*....|....*....|....*.
gi 1818118441 720 YLQLGALYAEQGKLQRALAIYREALS 745
Cdd:COG4785   198 LEDWATAYLLQGDTEEARELFKLALA 223
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 638-788 3.74e-20

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 87.55  E-value: 3.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 638 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqars 717
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE---------- 73

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1818118441 718 sAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQ 788
Cdd:COG4783    74 -ARLNLGLALLKAGDYDEALALLEKALKLDPEHPE----AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 579-744 5.24e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 5.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 579 LRTLRRNADWRDEESLYRSAIAINPPKA--LGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPA 656
Cdd:COG2956   117 AEIYEQEGDWEKAIEVLERLLKLGPENAhaYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 657 AVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQagsnldgasvrdRTAHDQARSSAYLQLGALYAEQGKLQRA 736
Cdd:COG2956   197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR------------KALELDPSDDLLLALADLLERKEGLEAA 264


                  ....*...
gi 1818118441 737 LAIYREAL 744
Cdd:COG2956   265 LALLERQL 272
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 580-702 2.38e-19

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 85.24  E-value: 2.38e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 657
Cdd:COG4783    12 QALLLAGDYDEAEALLEKALELDPdnPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEA 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1818118441 658 VECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLD 702
Cdd:COG4783    92 LALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 610-748 1.57e-18

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 82.93  E-value: 1.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 610 LGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQ 689
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1818118441 690 QAIEILQAGSNLDGASVrdrtahdqarsSAYLQLGALYAEQGKLQRALAIYREALSSLP 748
Cdd:COG4783    90 EALALLEKALKLDPEHP-----------EAYLRLARAYRALGRPDEAIAALEKALELDP 137
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 595-820 5.47e-17

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 85.91  E-value: 5.47e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 595 YRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLA 672
Cdd:TIGR02917 216 YRKAIALRPnnIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 673 VAYLNLGISFIALGKRQQAIEILQAgsnldgasVRDRTAHD-QARssayLQLGALYAEQGKLQRALAIYREALSSLPGLP 751
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQAYQYLNQ--------ILKYAPNShQAR----RLLASIQLRLGRVDEAIATLSPALGLDPDDP 363

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1818118441 752 QQREVLyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITlarnpRLGGGDVVQA--SLETGAR 820
Cdd:TIGR02917 364 AALSLL----GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS-----KLSQGDPSEAiaDLETAAQ 425
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 622-756 6.56e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 77.74  E-value: 6.56e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 622 EAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNL 701
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1818118441 702 DGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQQREV 756
Cdd:COG4235    81 DPDNPE-----------ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 595-697 1.20e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 74.27  E-value: 1.20e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 595 YRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLA 672
Cdd:COG4235     6 LRQALAANPndAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85

                          90       100
                  ....*....|....*....|....*
gi 1818118441 673 VAYLNLGISFIALGKRQQAIEILQA 697
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQK 110
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 642-802 1.24e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 77.85  E-value: 1.24e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 642 FNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQagsNLdgasvrdrTAHDQARSSAYL 721
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQ---KL--------LERDPDRAEALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 722 QLGALYAEQGKLQRALAIYREALSslpgLPQQREVLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLAR 801
Cdd:COG2956    81 ELAQDYLKAGLLDRAEELLEKLLE----LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE 156


                  .
gi 1818118441 802 N 802
Cdd:COG2956   157 Q 157
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 573-702 3.14e-15

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 73.84  E-value: 3.14e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 573 LLAAMSLRTLRRNADWRDEESLYRSAIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQ 652
Cdd:COG5010    23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1818118441 653 VYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLD 702
Cdd:COG5010   103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
613-696 2.30e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 69.43  E-value: 2.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 613 VLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVEcFQRAIKFRPNLAVAYLNLGISFIALGKRQQAI 692
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79


                  ....
gi 1818118441 693 EILQ 696
Cdd:COG3063    80 AYLE 83
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
582-671 8.09e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.89  E-value: 8.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 582 LRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQvLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVE 659
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPdnADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                          90
                  ....*....|..
gi 1818118441 660 CFQRAIKFRPNL 671
Cdd:COG3063    81 YLERALELDPSA 92
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 641-801 1.11e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.03  E-value: 1.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 641 HFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIE-ILQAGSNLDGASVRDRTAHDQArssA 719
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAaALLALAAGEAAAAAAALLLLAA---L 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 720 YLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITL 799
Cdd:COG3914    81 LELAALLLQALGRYEEALALYRRALALNPDNAE----ALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156


                  ..
gi 1818118441 800 AR 801
Cdd:COG3914   157 RR 158
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 672-806 2.37e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 67.91  E-value: 2.37e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 672 AVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLPGLP 751
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPE-----------AFALLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1818118441 752 QqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNPRLG 806
Cdd:COG4783    73 E----ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
647-752 6.31e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 65.19  E-value: 6.31e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 647 LHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAgsnldgasvrdrTAHDQARSSAYLQLGAL 726
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKA------------LKLDPNNAEALLNLAEL 68

                          90       100
                  ....*....|....*....|....*.
gi 1818118441 727 YAEQGKLQRALAIYREALSSLPGLPQ 752
Cdd:COG3063    69 LLELGDYDEALAYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
574-801 8.32e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 8.32e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 574 LAAMSLRTLRRNADWRDEESLYRSAIAINPPKALGNLGSVLSSQGRYEEAK--------QVLQEAIRFRPNMADVHFNLG 645
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAalaaaalaAERIDRALALPDLAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 646 ILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDgasvrdrTAHDQARssaylqlga 725
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD-------PDYAYAY--------- 144

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441 726 lyaeqgkLQRALAIYRealsslpglpqqrevlyqrigdvlgrLQQWDEAERHHRAALELQPNQVAAHLSYGITLAR 801
Cdd:COG4785   145 -------LNRGIALYY--------------------------LGRYELAIADLEKALELDPNDPERALWLYLAERK 187
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 580-670 2.73e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 2.73e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 657
Cdd:COG4783    46 EILLQLGDLDEAIVLLHEALELDPdePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125

                          90
                  ....*....|...
gi 1818118441 658 VECFQRAIKFRPN 670
Cdd:COG4783   126 IAALEKALELDPD 138
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 580-676 7.47e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.49  E-value: 7.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAA 657
Cdd:COG4235    25 RAYLRLGRYDEALAAYEKALRLDPdnADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEA 104

                          90
                  ....*....|....*....
gi 1818118441 658 VECFQRAIKFRPNLAVAYL 676
Cdd:COG4235   105 IAAWQKLLALLPADAPARL 123
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 656-793 9.90e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 63.10  E-value: 9.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 656 AAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVrdrtahdqarsSAYLQLGALYAEQGKLQR 735
Cdd:COG4235     1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA-----------DALLDLAEALLAAGDTEE 69

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1818118441 736 ALAIYREALSSLPGLPQQREVLyqriGDVLGRLQQWDEAERHHRAALELQPNQVAAHL 793
Cdd:COG4235    70 AEELLERALALDPDNPEALYLL----GLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 566-669 1.29e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 63.44  E-value: 1.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 566 LLLSFSVLLAAMSLRTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFN 643
Cdd:COG5010    48 DKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPnnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                          90       100
                  ....*....|....*....|....*.
gi 1818118441 644 LGILHQNQQVYPAAVECFQRAIKFRP 669
Cdd:COG5010   128 LAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 619-748 4.14e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 4.14e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 619 RYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAG 698
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1818118441 699 SNLDGASVRdrtahdqarssAYLQLGALYAEQGKLQRALAIYREALSSLP 748
Cdd:COG5010   115 LALSPDNPN-----------AYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 714-801 8.19e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.59  E-value: 8.19e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 714 QARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHL 793
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76


                  ....*...
gi 1818118441 794 SYGITLAR 801
Cdd:COG4783    77 NLGLALLK 84
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 565-799 2.66e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 64.33  E-value: 2.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 565 TLLLSFSVLLAAmslrtlrrnADWRDEESLYRSAiainppkalgnlgSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNL 644
Cdd:TIGR02917   5 TALLCIALALSA---------CGDQSPEELIEAA-------------KSYLQKNKYKAAIIQLKNALQKDPNDAEARFLL 62

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 645 GILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDG--------------------- 703
Cdd:TIGR02917  63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDegaaellalrglaylglgqle 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 704 ---ASVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGlpqQREVLYQRiGDVLGRLQQWDEAERHHRA 780
Cdd:TIGR02917 143 laqKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG---NVDALLLK-GDLLLSLGNIELALAAYRK 218

                         250
                  ....*....|....*....
gi 1818118441 781 ALELQPNQVAAHLSYGITL 799
Cdd:TIGR02917 219 AIALRPNNIAVLLALATIL 237
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 592-793 3.15e-10

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 63.95  E-value: 3.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 592 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRP 669
Cdd:TIGR02917 485 REAFEKALSIEPdfFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP 564

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 670 NLAVAYLNLGISFIALGKRQQAIEILqagsnldgasvrdRTAHDQARSS--AYLQLGALYAEQGKLQRALAIYREALSSL 747
Cdd:TIGR02917 565 QEIEPALALAQYYLGKGQLKKALAIL-------------NEAADAAPDSpeAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1818118441 748 PglpQQREVLYqRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHL 793
Cdd:TIGR02917 632 P---DSALALL-LLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 704-802 9.62e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 57.32  E-value: 9.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 704 ASVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALE 783
Cdd:COG4235     4 ARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD----ALLDLAEALLAAGDTEEAEELLERALA 79

                          90
                  ....*....|....*....
gi 1818118441 784 LQPNQVAAHLSYGITLARN 802
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQQ 98
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 597-792 5.83e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.71  E-value: 5.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 597 SAIAINPPKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYL 676
Cdd:TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 677 NLGISFIALGKRQQAIEILqagsnldgasvrdRTAHDQARSSA--YLQLGALYAEQGKLQRALAIYREALSSLPG---LP 751
Cdd:TIGR02917 674 GLAQLLLAAKRTESAKKIA-------------KSLQKQHPKAAlgFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnAI 740

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1818118441 752 QQREVL---------------YQRI-----------GDVLGRLQQWDEAERHHRAALELQPNQVAAH 792
Cdd:TIGR02917 741 KLHRALlasgntaeavktleaWLKThpndavlrtalAELYLAQKDYDKAIKHYQTVVKKAPDNAVVL 807
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 598-804 7.04e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.71  E-value: 7.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 598 AIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAY 675
Cdd:TIGR02917 355 ALGLDPddPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 676 LNLGISFIALGKRQQAIeilqagsnldgASVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQQRE 755
Cdd:TIGR02917 435 LLLILSYLRSGQFDKAL-----------AAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1818118441 756 VLyQRIGDVLGRLqqwDEAERHHRAALELQPNQVAAHLSYGITLARNPR 804
Cdd:TIGR02917 504 NL-ARIDIQEGNP---DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 580-674 7.75e-09

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 54.23  E-value: 7.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP-----PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN---MADVHFNLGILHQNQ 651
Cdd:COG1729     1 KALLKAGDYDEAIAAFKAFLKRYPnsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80

                          90       100
                  ....*....|....*....|...
gi 1818118441 652 QVYPAAVECFQRAIKFRPNLAVA 674
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAA 103
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 572-802 1.45e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 58.56  E-value: 1.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 572 VLLAAMSLRtlRRNADwRDEESLyRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQ 649
Cdd:TIGR02917 639 LLLADAYAV--MKNYA-KAITSL-KRALELKPdnTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYL 714

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 650 NQQVYPAAVECFQRAIKFRPN-LAVAYLNLGISfiALGKRQQAIEILQAGSNLDGASVRDRTAhdqarssaylqLGALYA 728
Cdd:TIGR02917 715 RQKDYPAAIQAYRKALKRAPSsQNAIKLHRALL--ASGNTAEAVKTLEAWLKTHPNDAVLRTA-----------LAELYL 781

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 729 EQGKLQRALAIYREALSSLPGLPQqrevlyqrigdVLGRL-----QQWD-EAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:TIGR02917 782 AQKDYDKAIKHYQTVVKKAPDNAV-----------VLNNLawlylELKDpRALEYAERALKLAPNIPAILDTLGWLLVEK 850
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 662-786 1.62e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 54.58  E-value: 1.62e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 662 QRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASvrdrtahdqarSSAYLQLGALYAEQGKLQRALAIYR 741
Cdd:COG5010    44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN-----------PELYYNLALLYSRSGDKDEAKEYYE 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1818118441 742 EALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQP 786
Cdd:COG5010   113 KALALSPDNPN----AYSNLAALLLSLGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 680-791 4.91e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.92  E-value: 4.91e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 680 ISFIALGKRQQAIEILQAgsnldgasVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQQREVLYq 759
Cdd:COG1729     1 KALLKAGDYDEAIAAFKA--------FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALL- 71

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1818118441 760 RIGDVLGRLQQWDEAERHHRAALELQPNQVAA 791
Cdd:COG1729    72 KLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 670-805 5.02e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 5.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 670 NLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPG 749
Cdd:COG5010     7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441 750 LPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARNPRL 805
Cdd:COG5010    87 NPE----LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 610-793 7.60e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 56.25  E-value: 7.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 610 LGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQ 689
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 690 QAIEILQAgsnldgASVRDRTAHdqarsSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevlyqrIGDVLGRLQ 769
Cdd:TIGR02917 551 EAVAWLEK------AAELNPQEI-----EPALALAQYYLGKGQLKKALAILNEAADAAPDSPE--------AWLMLGRAQ 611

                         170       180
                  ....*....|....*....|....*...
gi 1818118441 770 ----QWDEAERHHRAALELQPNQVAAHL 793
Cdd:TIGR02917 612 laagDLNKAVSSFKKLLALQPDSALALL 639
TPR_11 pfam13414
TPR repeat;
611-652 7.97e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 49.01  E-value: 7.97e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1818118441 611 GSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQ 652
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 654-755 9.31e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 51.15  E-value: 9.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 654 YPAAVECFQRAIKFRPN---LAVAYLNLGISFIALGKRQQAIEILQAgsnldgasVRDRTAHDQARSSAYLQLGALYAEQ 730
Cdd:COG1729     9 YDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEK--------LLKRYPDSPKAPDALLKLGLSYLEL 80

                          90       100
                  ....*....|....*....|....*
gi 1818118441 731 GKLQRALAIYREALSSLPGLPQQRE 755
Cdd:COG1729    81 GDYDKARATLEELIKKYPDSEAAKE 105
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 616-717 1.36e-07

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 51.14  E-value: 1.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 616 SQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEIL 695
Cdd:TIGR02552  29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKAL 108

                          90       100
                  ....*....|....*....|..
gi 1818118441 696 QAGSNLDGASVRDRTAHDQARS 717
Cdd:TIGR02552 109 DLAIEICGENPEYSELKERAEA 130
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 616-747 2.90e-07

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 53.02  E-value: 2.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 616 SQGRYEEAKQVLQEAIRFRPNMADVHFNLGILH-QNQQVyPAAVECFQRAIKFRPNL-AVAYLNLG--------ISFIal 685
Cdd:cd24142    12 DQGNFELALKFLQRALELEPNNVEALELLGEILlELGDV-EEAREVLLRAIELDPDGgYEKYLYLGqlsggeeaLQYY-- 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 686 gkrQQAIEILQAG-SNLDGASVRDRTAHDQAR---SSAYLQLGALY---------AEQ---GKLQRALAIYR---EALSS 746
Cdd:cd24142    89 ---EKGIEILEEElQALQAASAEAEEEAEELKrklSSALCALAEIYmtdlcdepdAEQrceELITKALELDPtnpEALQT 165


                  .
gi 1818118441 747 L 747
Cdd:cd24142   166 L 166
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 584-754 1.09e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 1.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 584 RNADWRDEESLYRSAIAINP-PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQ 662
Cdd:TIGR02917 715 RQKDYPAAIQAYRKALKRAPsSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQ 794

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 663 RAIKFRPNLAVAYLNLgiSFIAL-GKRQQAIEILQagsnldgasvrdrTAHDQARSSAYL--QLGALYAEQGKLQRALAI 739
Cdd:TIGR02917 795 TVVKKAPDNAVVLNNL--AWLYLeLKDPRALEYAE-------------RALKLAPNIPAIldTLGWLLVEKGEADRALPL 859

                         170
                  ....*....|....*
gi 1818118441 740 YREALSSLPGLPQQR 754
Cdd:TIGR02917 860 LRKAVNIAPEAAAIR 874
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
726-801 3.72e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 3.72e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441 726 LYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAaLELQPNQVAAHLSYGITLAR 801
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNAD----ALNNLGLLLLEQGRYDEAIALEKA-LKLDPNNAEALLNLAELLLE 71
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 714-796 4.31e-06

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 48.87  E-value: 4.31e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 714 QARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQ---QREVLYQRIGDVlgrlqqwDEAERHHRAALELQPNQVA 790
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLaylALALYYQQLGEL-------EKAEDSFRRALTLNPNNGD 100


                  ....*.
gi 1818118441 791 AHLSYG 796
Cdd:TIGR02521 101 VLNNYG 106
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 593-665 4.35e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 49.55  E-value: 4.35e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441 593 SLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN-MADVHFNLGILHQNQQvypaAVECFQRAI 665
Cdd:cd24142    21 KFLQRALELEPnnVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSGGEE----ALQYYEKGI 92
TPR_12 pfam13424
Tetratricopeptide repeat;
605-670 4.55e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 4.55e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818118441 605 KALGNLGSVLSSQGRYEEAKQVLQEAIR--------FRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 670
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 592-789 5.76e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 50.08  E-value: 5.76e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441  592 ESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQ--------------QVYP 655
Cdd:PRK11447   289 IPELQQAVRANPkdSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRywlliqqgdaalkaNNLA 368

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441  656 AAVECFQRAIKFRPNLAVAYLNLGisfialgkrqqaiEILQAGSNLDGASVRDRTA--HDQARSSAYLQLGALYAEQGKl 733
Cdd:PRK11447   369 QAERLYQQARQVDNTDSYAVLGLG-------------DVAMARKDYAAAERYYQQAlrMDPGNTNAVRGLANLYRQQSP- 434

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441  734 QRALAIyreaLSSLPGlPQQREV----------LYQRIGDVLGRLQQWDEAERHHRAALELQPNQV 789
Cdd:PRK11447   435 EKALAF----IASLSA-SQRRSIddierslqndRLAQQAEALENQGKWAQAAELQRQRLALDPGSV 495
TPR_12 pfam13424
Tetratricopeptide repeat;
637-696 1.68e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 1.68e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1818118441 637 MADVHFNLGILHQNQQVYPAAVECFQRAI--------KFRPNLAVAYLNLGISFIALGKRQQAIEILQ 696
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrllgPDHPLTATTLLNLGRLYLELGRYEEALELLE 69
TPR_12 pfam13424
Tetratricopeptide repeat;
671-744 1.78e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 1.78e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818118441 671 LAVAYLNLGISFIALGKRQQAIEILQAGSNLDgASVRDRTAHDQARssAYLQLGALYAEQGKLQRALAIYREAL 744
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIA-RRLLGPDHPLTAT--TLLNLGRLYLELGRYEEALELLERAL 72
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 630-697 1.97e-05

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 47.19  E-value: 1.97e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1818118441 630 AIRFRPNMADVhFN-LGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQAIEILQA 697
Cdd:PRK11189   90 ALALRPDMADA-YNyLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA 157
TPR_12 pfam13424
Tetratricopeptide repeat;
716-784 2.18e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.18e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1818118441 716 RSSAYLQLGALYAEQGKLQRALAIYREAL-----SSLPGLPQQREVLYQrIGDVLGRLQQWDEAERHHRAALEL 784
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALeiarrLLGPDHPLTATTLLN-LGRLYLELGRYEEALELLERALAL 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 715-793 3.99e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 3.99e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1818118441 715 ARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHL 793
Cdd:COG2956     6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 618-704 4.99e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.44  E-value: 4.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 618 GRYEEAKQVLQEAIRFRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPNlAVAYLNLGISFIALGKRQQAIEILQA 697
Cdd:COG3071   238 GDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRK 316


                  ....*..
gi 1818118441 698 GSNLDGA 704
Cdd:COG3071   317 ALALALG 323
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 670-801 5.58e-05

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 46.15  E-value: 5.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 670 NLAVAYLNLGISFIALGKRQQAIEILQAGSNLDGASVrdrtahdqarssAYLQLGALYAEQGKLQRALAIYREAL----- 744
Cdd:pfam17874  45 VLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLW------------ALLQQGEILRAQGRLHQALETYQQALqlard 112

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1818118441 745 SSLPGLPQQrEVLYQRIGDVLGRLQQWDEAERHHRAALEL-QPNQVAAHLSYGITLAR 801
Cdd:pfam17874 113 HGLQHLPLH-GFLLVGLADLLYEWNDLEEAEQHAQQGIQLgRQWEPDAAVDAYVLLAR 169
TPR_11 pfam13414
TPR repeat;
646-686 5.94e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 40.92  E-value: 5.94e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1818118441 646 ILHQNQQvYPAAVECFQRAIKFRPNLAVAYLNLGISFIALG 686
Cdd:pfam13414   3 AYYEQGK-YEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_1 pfam00515
Tetratricopeptide repeat;
638-670 7.99e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 7.99e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1818118441 638 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 670
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 654-757 8.93e-05

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 44.46  E-value: 8.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 654 YPAAVECFQRAIKFRPN---LAVAYLNLGISFIALGKRQQAIEILQAgsnldgasvrdrtAHDQARSSAYLQL-GALYAE 729
Cdd:COG2976   106 LDKAAAQLQWVLDNAKDpalKALARLRLARVLLAQKKYDEALATLDA-------------VKPEAFAALYAELrGDILLA 172

                          90       100
                  ....*....|....*....|....*...
gi 1818118441 730 QGKLQRALAIYREALSSLPGLPQQREVL 757
Cdd:COG2976   173 QGDKAEARAAYQKALAALPEDAPLRQLL 200
TPR_1 pfam00515
Tetratricopeptide repeat;
604-636 1.74e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 1.74e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1818118441 604 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN 636
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 638-670 2.48e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.97  E-value: 2.48e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1818118441  638 ADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 670
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR_8 pfam13181
Tetratricopeptide repeat;
605-636 2.67e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 38.92  E-value: 2.67e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1818118441 605 KALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN 636
Cdd:pfam13181   2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 707-806 5.00e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.83  E-value: 5.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 707 RDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQQRevLYQRIGDVLGRLQQWDEAERHHRAALELQP 786
Cdd:COG3914    32 LEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA--LLELAALLLQALGRYEEALALYRRALALNP 109

                          90       100
                  ....*....|....*....|
gi 1818118441 787 NQVAAHLSYGITLARNPRLG 806
Cdd:COG3914   110 DNAEALFNLGNLLLALGRLE 129
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 604-637 5.66e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 5.66e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1818118441  604 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNM 637
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 706-802 7.65e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 7.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 706 VRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLPQQREVLYQRIGDVLGRLQQWDEAERHHRAALELQ 785
Cdd:COG5010     5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                          90
                  ....*....|....*..
gi 1818118441 786 PNQVAAHLSYGITLARN 802
Cdd:COG5010    85 PNNPELYYNLALLYSRS 101
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 556-711 1.12e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 40.81  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 556 MACNQRTRNTLLLSFSVLlAAMSLRTLRRNADWRDEESLYRSAiainppkalgnlgsvLSSQ--GRYEEAKQVLQEAIRF 633
Cdd:PRK02603    1 MPRTQRNDNFIDKSFTVM-ADLILKILPINKKAKEAFVYYRDG---------------MSAQadGEYAEALENYEEALKL 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 634 RPNMAD---VHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNLGISFIALGKRQQaieilQAGSNLDGASVRDRT 710
Cdd:PRK02603   65 EEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAE-----EAGDQDEAEALFDKA 139


                  .
gi 1818118441 711 A 711
Cdd:PRK02603  140 A 140
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 735-802 1.26e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.60  E-value: 1.26e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1818118441 735 RALAIYREALSSLPGLPQqrevLYQRIGDVLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:COG4235     1 EAIARLRQALAANPNDAE----GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAA 64
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 676-788 1.36e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 40.99  E-value: 1.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 676 LNLGISFIALGKRQQAIEILQAgsnldgasVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIyreaLSSLPGLPQQRE 755
Cdd:COG2976    94 LLLAKAAVDAGDLDKAAAQLQW--------VLDNAKDPALKALARLRLARVLLAQKKYDEALAT----LDAVKPEAFAAL 161

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1818118441 756 VLYQRiGDVLGRLQQWDEAERHHRAALELQPNQ 788
Cdd:COG2976   162 YAELR-GDILLAQGDKAEARAAYQKALAALPED 193
ycf3 CHL00033
photosystem I assembly protein Ycf3
 616-693 1.68e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 39.99  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 616 SQGRYEEAKQVLQEAIRFRPNMAD---VHFNLGILHQNQQVYPAAVECFQRAIKFRPNLAVAYLNlgISFIALGKRQQAI 692
Cdd:CHL00033   47 SEGEYAEALQNYYEAMRLEIDPYDrsyILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN--MAVICHYRGEQAI 124


                  .
gi 1818118441 693 E 693
Cdd:CHL00033  125 E 125
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 580-637 2.28e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 2.28e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1818118441 580 RTLRRNADWRDEESLYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPNM 637
Cdd:COG4783    80 LALLKAGDYDEALALLEKALKLDPehPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 604-636 2.88e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 2.88e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1818118441 604 PKALGNLGSVLSSQGRYEEAKQVLQEAIRFRPN 636
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
764-802 3.42e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 3.42e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1818118441 764 VLGRLQQWDEAERHHRAALELQPNQVAAHLSYGITLARN 802
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQ 39
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 609-670 4.77e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.55  E-value: 4.77e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1818118441 609 NLGSVLSSQGRYEEAKQVLQEAIR---FRPNMADVHFNLGILHQNQQVYPAAVECFQRAIKFRPN 670
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALArfpESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_10 pfam13374
Tetratricopeptide repeat;
606-634 5.88e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 35.17  E-value: 5.88e-03
                          10        20
                  ....*....|....*....|....*....
gi 1818118441 606 ALGNLGSVLSSQGRYEEAKQVLQEAIRFR 634
Cdd:pfam13374   4 SLNNLANALRAQGRYDEAEELLEEALAIR 32
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 676-751 6.10e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.16  E-value: 6.10e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1818118441 676 LNLGISFIALGKRQQAIEILQAgsnldgasVRDRTAHDQARSSAYLQLGALYAEQGKLQRALAIYREALSSLPGLP 751
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEA--------ALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_17 pfam13431
Tetratricopeptide repeat;
594-625 6.37e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 34.83  E-value: 6.37e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1818118441 594 LYRSAIAINP--PKALGNLGSVLSSQGRYEEAKQ 625
Cdd:pfam13431   1 LYLKALELDPnnADAYYNLAVLLLELGQSETALQ 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 717-744 8.64e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 8.64e-03
                           10        20
                   ....*....|....*....|....*...
gi 1818118441  717 SSAYLQLGALYAEQGKLQRALAIYREAL 744
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKAL 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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