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TRIM53AP tripartite motif containing 53A, pseudogene [ Homo sapiens (human) ]

Gene ID: 642569, updated on 17-Sep-2024

Summary

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Official Symbol
TRIM53APprovided by HGNC
Official Full Name
tripartite motif containing 53A, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:19025
See related
Ensembl:ENSG00000225581 AllianceGenome:HGNC:19025
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRIM53; TRIM53P; TRIM80P
Expression
Low expression observed in reference dataset See more
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Genomic context

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See TRIM53AP in Genome Data Viewer
Location:
11q14.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (89993541..90002508, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (89913703..89922678, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (89726709..89735676, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ANKRD33B pseudogene 9 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:89716992-89717989 Neighboring gene tripartite motif-containing 51E, pseudogene Neighboring gene tripartite motif containing 64B pseudogene Neighboring gene tripartite motif containing 49C Neighboring gene ANKRD33B pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of a genomic reservoir for new TRIM genes in primate genomes. Han K, et al. PLoS Genet, 2011 Dec. PMID 22144910, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • tripartite motif containing 53, pseudogene
  • tripartite motif-containing 49 pseudogene
  • tripartite motif-containing 53

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028346.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP004607, CA449274
    Related
    ENST00000532014.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    89993541..90002508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    89913703..89922678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001145126.1: Suppressed sequence

    Description
    NM_001145126.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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