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LOC587274 laminin subunit alpha-2 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 587274, updated on 14-Dec-2023

Summary

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Gene symbol
LOC587274
Gene description
laminin subunit alpha-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC587274 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
47
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145598.1 (29848941..29909071)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577457.1 (32183..201507)

NW_022145598.1Genomic Context describing neighboring genes Neighboring gene A-agglutinin anchorage subunit-like Neighboring gene uncharacterized LOC115923104 Neighboring gene SPO11 initiator of meiotic double stranded breaks Neighboring gene laminin subunit alpha-1-like Neighboring gene 5-hydroxytryptamine receptor 1D-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-2
Names
laminin subunit alpha-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145598.1 Reference Spur_5.0 Primary Assembly

    Range
    29848941..29909071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030983687.1 → XP_030839547.1  laminin subunit alpha-2

    UniProtKB/TrEMBL
    A0A7M7SXZ8
    Conserved Domains (9) summary
    TIGR01843
    Location:1789 → 1941
    type_I_hlyD; type I secretion membrane fusion protein, HlyD family
    smart00282
    Location:2056 → 2186
    LamG; Laminin G domain
    cd00055
    Location:1298 → 1346
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam06008
    Location:1472 → 1734
    Laminin_I; Laminin Domain I
    pfam00052
    Location:470 → 615
    Laminin_B; Laminin B (Domain IV)
    pfam00053
    Location:860 → 908
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:3 → 167
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam06009
    Location:1923 → 2050
    Laminin_II; Laminin Domain II
    cl22861
    Location:2217 → 2262
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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