U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fip1l1a FIP1 like 1a (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 561900, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
fip1l1aprovided by ZNC
Official Full Name
FIP1 like 1a (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-041014-8
See related
Ensembl:ENSDARG00000043328 AllianceGenome:ZFIN:ZDB-GENE-041014-8
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-161n17.1
Summary
Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See fip1l1a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (22742600..22798744, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (22842774..22899076, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488643 Neighboring gene ligand of numb-protein X 1 Neighboring gene sec1 family domain containing 2 Neighboring gene uncharacterized LOC137488644 Neighboring gene RAS-like, family 11, member B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Selecting biologically informative genes in co-expression networks with a centrality score. Azuaje FJ. Biol Direct, 2014 Jun 19. PMID 24947308, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
pre-mRNA 3'-end-processing factor FIP1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    22742600..22798744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_685302.9 → XP_690394.3  pre-mRNA 3'-end-processing factor FIP1 isoform X3

    See identical proteins and their annotated locations for XP_690394.3

    UniProtKB/TrEMBL
    A0A8N7T5Y5, F1R7J7, Q5RHJ8
    Related
    ENSDARP00000118281.2, ENSDART00000148084.4
    Conserved Domains (1) summary
    pfam05182
    Location:110 → 152
    Fip1; Fip1 motif

  2. XM_068215632.1 → XP_068071733.1  pre-mRNA 3'-end-processing factor FIP1 isoform X2

  3. XM_068215631.1 → XP_068071732.1  pre-mRNA 3'-end-processing factor FIP1 isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395070.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    359050..361610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473362.2 → XP_021329037.1  pre-mRNA 3'-end-processing factor FIP1 isoform X6

    UniProtKB/TrEMBL
    A0A8M9PD75

  2. XM_021473361.2 → XP_021329036.1  pre-mRNA 3'-end-processing factor FIP1 isoform X5

    UniProtKB/TrEMBL
    A0A8M9Q2Z3

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395071.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    10412..52671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068218945.1 → XP_068075046.1  pre-mRNA 3'-end-processing factor FIP1 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials